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lineagespot

Bioc current

Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing

v1.16.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

Lineagespot is a framework written in R, and aims to identify SARS-CoV-2 related mutations based on a single (or a list) of variant(s) file(s) (i.e., variant calling format). The method can facilitate the detection of SARS-CoV-2 lineages in wastewater samples using next generation sequencing, and attempts to infer the potential distribution of the SARS-CoV-2 lineages.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › VariantDetection
Software › BiologicalQuestion › VariantAnnotation
Software › Technology › Sequencing

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