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OutSplice

Bioc current

Comparison of Splicing Events between Tumor and Normal Samples

v1.12.0 · software · GPL-2
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.17 · Apr 26, 2023

Current · Requires R 4.6

1.0 In 7 of 49 releases 3.23

Description

An easy to use tool that can compare splicing events in tumor and normal tissue samples using either a user generated matrix, or data from The Cancer Genome Atlas (TCGA). This package generates a matrix of splicing outliers that are significantly over or underexpressed in tumors samples compared to normal denoted by chromosome location. The package also will calculate the splicing burden in each tumor and characterize the types of splicing events that occur.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › AlternativeSplicing
Software › BiologicalQuestion › DifferentialExpression
Software › BiologicalQuestion › DifferentialSplicing
Software › AssayDomain › GeneExpression
Software › Technology › Sequencing › RNASeq
Software
Software › BiologicalQuestion › VariantAnnotation

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