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Topic: Spatial or MicroarrayData or SingleCell

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Release: Release 3.4 (2016)

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124 packages on Bioconductor tagged Spatial or MicroarrayData or SingleCell, most distinct IPs first

Spatial, MicroarrayData and SingleCell in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
HDF5Array
HDF5 datasets as array-like objects in RHervé Pagès		Hervé Pagèssoftware28 Apr 202620,53728
scater
Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 202612,63578
scran
Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun		Aaron Lunsoftware28 Apr 202610,13962
MAST
Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid		Andrew McDavidsoftware28 Apr 20263,74056
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
SC3
Single-Cell Consensus ClusteringVladimir Kiselev		Vladimir Kiselevsoftware28 Apr 20261,36892
affydata
Affymetrix Data for Demonstration PurposeRobert D Shear		Robert D Shearexperiment5 May 20261,24412
clusterExperiment
Compare Clusterings for Single-Cell SequencingElizabeth Purdom		Elizabeth Purdomsoftware28 Apr 20261,150147
Linnorm
Linear model and normality based normalization and transformation method (Linnorm)Shun Hang Yip		Shun Hang Yipsoftware28 Apr 20261,08862
bladderbatch
Bladder gene expression data illustrating batch effectsJeffrey T. Leek		Jeffrey T. Leekexperiment5 May 20261,0497
TRONCO
TRONCO, an R package for TRanslational ONCOlogyLuca De Sano		Luca De Sanosoftware28 Apr 20261,02547
SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)Luca De Sano		Luca De Sanosoftware28 Apr 20261,01014
immunoClust
immunoClust - Automated Pipeline for Population Detection in Flow CytometryTill Soerensen		Till Soerensensoftware28 Apr 202691824
ExpressionAtlas
Download datasets from EMBL-EBI Expression AtlasAnil Thanki		Anil Thankisoftware28 Apr 202682764
minfiData
Example data for the Illumina Methylation 450k arrayKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 2026788146
switchde
Switch-like differential expression across single-cell trajectoriesKieran Campbell		Kieran Campbellsoftware28 Apr 202678050
fibroEset
exprSet for Karaman et al. (2003) fibroblasts dataSylvia Merk		Sylvia Merkexperiment5 May 20267087
Illumina450ProbeVariants.db
Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probesTiffany Morris		Tiffany Morrisexperiment5 May 20266900
gageData
Auxillary data for gage packageWeijun Luo		Weijun Luoexperiment5 May 20266230
BPRMeth
Model higher-order methylation profilesChantriolnt-Andreas Kapourani		Chantriolnt-Andreas Kapouranisoftwareno date on record606
yeastCC
Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray dataSandrine Dudoit		Sandrine Dudoitexperiment5 May 20265927
ALLMLL
A subset of arrays from a large acute lymphoblastic leukemia (ALL) studyB. M. Bolstad		B. M. Bolstadexperiment5 May 202659012
AneuFinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data		no date on record584
lumiBarnes
Barnes Benchmark Illumina Tissues Titration DataPan Du		Pan Duexperiment5 May 2026577166
DLBCL
Diffuse large B-cell lymphoma expression dataMarcus Dittrich		Marcus Dittrichexperiment5 May 20265689
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026558144
DMRcatedata
Data Package for DMRcateTim Peters		Tim Petersexperiment5 May 2026522208
SpikeInSubset
Part of Affymetrix's Spike-In Experiment DataRobert D Shear		Robert D Shearexperiment5 May 202651612
ecoliLeucine
Experimental data with Affymetrix E. coli chipsLaurent Gautier		Laurent Gautierexperiment5 May 202650947