Packages

1,176 packages on Bioconductor tagged AnnotationData or Preprocessing, most distinct IPs first

AnnotationData and Preprocessing in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer	Bioconductor Maintainer	annotation	no date on record	36,797	0
GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	33,694	42
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
scuttle Legacy Utilities for Single-Cell RNA-Seq AnalysisAaron Lun	Aaron Lun	software	28 Apr 2026	14,236	39
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
scater Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan	Alan O'Callaghan	software	2 Jul 2026	12,635	78
ensembldb Utilities to create and use Ensembl-based annotation databasesJohannes Rainer	Johannes Rainer	software	25 May 2026	11,000	80
sva Surrogate Variable AnalysisJeffrey T. Leek	Jeffrey T. Leek	software	5 May 2026	10,804	68
affy Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear	Robert D. Shear	software	28 Apr 2026	10,556	11
reactome.db A set of annotation maps for reactomeWillem Ligtenberg	Willem Ligtenberg	annotation	no date on record	7,578	42
vsn Variance stabilization and calibration for microarray dataWolfgang Huber	Wolfgang Huber	software	28 Apr 2026	7,536	33
biovizBase Basic graphic utilities for visualization of genomic data.Michael Lawrence	Michael Lawrence	software	28 Apr 2026	6,487	126
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
scDblFinder scDblFinderPierre-Luc Germain	Pierre-Luc Germain	software	14 Oct 2026	6,116	121
tximport Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love	Michael Love	software	28 Apr 2026	5,804	3
HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu	Erqiang Hu	annotation	no date on record	5,277	42
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho	Benilton Carvalho	software	28 Apr 2026	4,087	52
minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	software	28 Apr 2026	4,041	143
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
cytolib C++ infrastructure for representing and interacting with the gated cytometry dataMike Jiang	Mike Jiang	software	28 Apr 2026	3,820	8
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
marray Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang	Yee Hwa (Jean) Yang	software	28 Apr 2026	3,311	7
variancePartition Quantify and interpret drivers of variation in multilevel gene expression experimentsGabriel E. Hoffman	Gabriel E. Hoffman	software	28 Apr 2026	3,211	99
org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,202	42
interactiveDisplayBase Base package for enabling powerful shiny web displays of Bioconductor objects			no date on record	2,988
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,951	8
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144