Packages
253 packages on Bioconductor tagged SingleCell or GeneRegulation or ExperimentData, most distinct IPs first
SingleCell, GeneRegulation and ExperimentData in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| TFBSTools Software Package for Transcription Factor Binding Site (TFBS) AnalysisGe Tan | Ge Tan | software | 28 Apr 2026 | 4,721 | 79 |
| ALL A data packageRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 4,171 | 7 |
| HSMMSingleCell Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)Cole Trapnell | Cole Trapnell | experiment | 5 May 2026 | 3,553 | 0 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| airway RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014Michael Love | Michael Love | experiment | 5 May 2026 | 2,854 | 25 |
| CNEr CNE Detection and VisualizationBoris Lenhard | Boris Lenhard | software | 28 Apr 2026 | 2,692 | 112 |
| DiffBind Differential Binding Analysis of ChIP-Seq Peak DataRory Stark | Rory Stark | software | 21 Jul 2026 | 2,490 | 141 |
| geneLenDataBase Lengths of mRNA transcripts for a number of genomesFederico Marini | Federico Marini | experiment | 5 May 2026 | 2,378 | 98 |
| bcellViper Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez | Mariano Javier Alvarez | experiment | 5 May 2026 | 2,177 | 7 |
| viper Virtual Inference of Protein-activity by Enriched Regulon analysisMariano J Alvarez | Mariano J Alvarez | software | 28 Apr 2026 | 2,060 | 87 |
| pasilla Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes | Alejandro Reyes | experiment | 5 May 2026 | 1,554 | 108 |
| qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo | Robert Castelo | software | 28 Apr 2026 | 1,495 | 81 |
| cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil | Gundula Povysil | software | 28 Apr 2026 | 1,256 | 30 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| affydata Affymetrix Data for Demonstration PurposeRobert D Shear | Robert D Shear | experiment | 5 May 2026 | 1,244 | 12 |
| golubEsets exprSets for golub leukemia dataVince Carey | Vince Carey | experiment | 5 May 2026 | 1,207 | 7 |
| BCRANK Predicting binding site consensus from ranked DNA sequencesAdam Ameur | Adam Ameur | software | 28 Apr 2026 | 1,138 | 15 |
| flowDensity Sequential Flow Cytometry Data GatingMehrnoush Malek | Mehrnoush Malek | software | 28 Apr 2026 | 1,125 | 104 |
| rTRM Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction NetworksDiego Diez | Diego Diez | software | 28 Apr 2026 | 1,117 | 47 |
| RNAseqData.HNRNPC.bam.chr14 Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès | Hervé Pagès | experiment | 5 May 2026 | 1,069 | 0 |
| faahKO Saghatelian et al. (2004) FAAH knockout LC/MS dataSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,061 | 144 |
| bladderbatch Bladder gene expression data illustrating batch effectsJeffrey T. Leek | Jeffrey T. Leek | experiment | 5 May 2026 | 1,049 | 7 |
| RTN RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulonsMauro Castro | Mauro Castro | software | 28 Apr 2026 | 1,023 | 142 |
| triplex Search and visualize intramolecular triplex-forming sequences in DNAJiri Hon | Jiri Hon | software | 28 Apr 2026 | 1,022 | 17 |
| tigre Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela | Antti Honkela | software | 28 Apr 2026 | 1,013 | 50 |
| pasillaBamSubset Subset of BAM files from "Pasilla" experimentHervé Pagès | Hervé Pagès | experiment | 5 May 2026 | 997 | 0 |
| MethylMix MethylMix: Identifying methylation driven cancer genesOlivier Gevaert | Olivier Gevaert | software | 28 Apr 2026 | 995 | 40 |
| tRanslatome Comparison between multiple levels of gene expressionToma Tebaldi | Toma Tebaldi | software | 28 Apr 2026 | 956 | 110 |
| GSVAdata Data employed in the vignette of the GSVA packageRobert Castelo | Robert Castelo | experiment | 28 Jul 2026 | 955 | 78 |