viper
Bioc currentVirtual Inference of Protein-activity by Enriched Regulon analysis
Release Lineage
Entered 2.14 · Apr 14, 2014
Current · Requires R 4.6
Description
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
54 25 exported
Complexity
6.5 avg / 36 max
Call network
54 nodes / 56 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,261
Files
64
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
30
Internal functions
29
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.14.0
System requirements
–
C++ standard
–
License
file LICENSE
License flags
SPDX valid, not OSI
History
Versions
25
First release
2014-04-11
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 47
- Examples that run
- 100%29 run in a plain check
- Exported functions with examples
- 90%
- Documented parameters
- 95%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Using VIPER PDF
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Topics
Depended on by (5)
Bioconductor (5)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
citation("viper")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.