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Topic: SingleCell or Proteomics or ImmunoOncology

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Release: Release 2.6 (2010)

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41 packages on Bioconductor tagged SingleCell or Proteomics or ImmunoOncology, most distinct IPs first

SingleCell, Proteomics and ImmunoOncology in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
flowCore
flowCore: Basic structures for flow cytometry dataMike Jiang		Mike Jiangsoftware28 Apr 20264,65121
xcms
LC-MS and GC-MS Data AnalysisSteffen Neumann		Steffen Neumannsoftware7 Jul 20263,537143
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
flowViz
Visualization for flow cytometryMike Jiang		Mike Jiangsoftware26 Aug 20262,37235
flowClust
Clustering for Flow CytometryGreg Finak		Greg Finaksoftware28 Apr 20262,26624
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
flowStats
Statistical methods for the analysis of flow cytometry dataGreg Finak		Greg Finaksoftware28 Apr 20261,764107
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Rdisop
Decomposition of Isotopic PatternsSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,5083
flowMeans
Non-parametric Flow Cytometry Data GatingNima Aghaeepour		Nima Aghaeepoursoftware28 Apr 20261,14745
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
DEGseq
Identify Differentially Expressed Genes from RNA-seq dataLikun Wang		Likun Wangsoftware28 Apr 20261,03332
apComplex
Estimate protein complex membership using AP-MS protein dataDenise Scholtens		Denise Scholtenssoftware28 Apr 20261,00948
gaga
GaGa hierarchical model for high-throughput data analysisDavid Rossell		David Rossellsoftware28 Apr 202695917
clippda
A package for the clinical proteomic profiling data analysisStephen Nyangoma		Stephen Nyangomasoftware28 Apr 202693242
flowMerge
Cluster Merging for Flow Cytometry DataGreg Finak		Greg Finaksoftware28 Apr 202693153
PROcess
Ciphergen SELDI-TOF ProcessingXiaochun Li		Xiaochun Lisoftware28 Apr 202689311
flowTrans
Parameter Optimization for Flow Cytometry Data TransformationGreg Finak		Greg Finaksoftware28 Apr 202685839
TargetSearch
A package for the analysis of GC-MS metabolite profiling dataAlvaro Cuadros-Inostroza		Alvaro Cuadros-Inostrozasoftware28 Apr 20268398
PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput DataSoo-heang Eo		Soo-heang Eosoftware28 Apr 202682310
DESeq
Differential gene expression analysis based on the negative binomial distribution		no date on record818
RTCA
Open-source toolkit to analyse data from xCELLigence System (RTCA)Jitao David Zhang		Jitao David Zhangsoftware28 Apr 20267949
SamSPECTRAL
Identifies cell population in flow cytometry dataHabil		Habilsoftware28 Apr 20267891
cellHTS2
Analysis of cell-based screens - revised version of cellHTS		no date on record778
MassArray
Analytical Tools for MassArray DataReid F. Thompson		Reid F. Thompsonsoftware28 Apr 20266845
SLGI
Synthetic Lethal Genetic Interaction		no date on record626