Packages
425 packages on Bioconductor tagged Microarray or Homo_sapiens, most distinct IPs first
Microarray and Homo_sapiens in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| AnnotationDbi Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 47,941 | 41 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 29,813 | 42 |
| GEOquery Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis | Sean Davis | software | 25 Oct 2026 | 15,960 | 73 |
| genefilter genefilter: methods for filtering genes from high-throughput experimentsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 15,340 | 52 |
| impute impute: Imputation for microarray dataBalasubramanian Narasimhan | Balasubramanian Narasimhan | software | 28 Apr 2026 | 14,554 | 0 |
| multtest Resampling-based multiple hypothesis testingKatherine S. Pollard | Katherine S. Pollard | software | 28 Apr 2026 | 14,457 | 15 |
| affyio Tools for parsing Affymetrix data filesBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 10,615 | 1 |
| affy Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear | Robert D. Shear | software | 28 Apr 2026 | 10,556 | 11 |
| vsn Variance stabilization and calibration for microarray dataWolfgang Huber | Wolfgang Huber | software | 28 Apr 2026 | 7,536 | 33 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| DNAcopy DNA Copy Number Data AnalysisVenkatraman E. Seshan | Venkatraman E. Seshan | software | 28 Apr 2026 | 5,054 | 0 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| siggenes Multiple Testing using SAM and Efron's Empirical Bayes ApproachesHolger Schwender | Holger Schwender | software | 28 Apr 2026 | 4,901 | 17 |
| hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,227 | 43 |
| oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 4,087 | 52 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 3,389 | 81 |
| affxparser Affymetrix File Parsing SDKKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 3,327 | 0 |
| marray Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang | Yee Hwa (Jean) Yang | software | 28 Apr 2026 | 3,311 | 7 |
| topGO Enrichment Analysis for Gene OntologyFederico Marini | Federico Marini | software | 28 Apr 2026 | 3,228 | 48 |
| IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 2,852 | 144 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |
| globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman | Jelle Goeman | software | 28 Apr 2026 | 2,842 | 50 |
| methylumi Handle Illumina methylation dataSean Davis | Sean Davis | software | 16 Aug 2026 | 2,825 | 158 |
| aroma.light Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson | Henrik Bengtsson | software | 28 Apr 2026 | 2,481 | 8 |
| lumi BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang | Lei Huang | software | 28 Apr 2026 | 2,454 | 165 |
| GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,437 | 63 |
| affyPLM Methods for fitting probe-level modelsBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 2,430 | 22 |
| Mfuzz Soft clustering of omics time series dataMatthias Futschik | Matthias Futschik | software | 28 Apr 2026 | 2,353 | 16 |