Packages
170 packages on Bioconductor tagged ExperimentData or Mus_musculus or Pathways, most distinct IPs first
ExperimentData, Mus_musculus and Pathways in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| GOSemSim GO-terms Semantic Similarity MeasuresGuangchuang Yu | Guangchuang Yu | software | 30 Jun 2026 | 27,495 | 48 |
| annotate Annotation for microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 22,557 | 44 |
| org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 13,520 | 42 |
| GSEABase Gene set enrichment data structures and methodsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 13,344 | 46 |
| KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang | Jitao David Zhang | software | 28 Apr 2026 | 6,807 | 14 |
| topGO Enrichment Analysis for Gene OntologyFederico Marini | Federico Marini | software | 28 Apr 2026 | 3,228 | 48 |
| globaltest Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set TestingJelle Goeman | Jelle Goeman | software | 28 Apr 2026 | 2,842 | 50 |
| GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,437 | 63 |
| Category Category AnalysisBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,355 | 57 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| GlobalAncova Global test for groups of variables via model comparisonsManuela Hummel | Manuela Hummel | software | 28 Apr 2026 | 2,062 | 70 |
| safe Significance Analysis of Function and ExpressionLudwig Geistlinger | Ludwig Geistlinger | software | 3 May 2026 | 1,595 | 43 |
| qpgraph Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics DataRobert Castelo | Robert Castelo | software | 28 Apr 2026 | 1,495 | 81 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| annaffy Annotation tools for Affymetrix biological metadataColin A. Smith | Colin A. Smith | software | 28 Apr 2026 | 1,173 | 44 |
| goProfiles goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez | Alex Sanchez | software | 28 Apr 2026 | 1,065 | 47 |
| mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,058 | 43 |
| EnsDb.Mmusculus.v79 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 955 | 81 |
| mouse4302cdf mouse4302cdfBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 944 | 42 |
| pathRender Render molecular pathwaysVince Carey | Vince Carey | software | 28 Apr 2026 | 898 | 47 |
| TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 893 | 75 |
| goTools Functions for Gene Ontology databaseAgnes Paquet | Agnes Paquet | software | 28 Apr 2026 | 882 | 43 |
| SBMLR SBML-R Interface and Analysis ToolsTomas Radivoyevitch | Tomas Radivoyevitch | software | 28 Apr 2026 | 834 | 7 |
| ChAMPdata Data Packages for ChAMP packageYuan Tian | Yuan Tian | experiment | 5 May 2026 | 816 | 11 |
| miRNApath miRNApath: Pathway Enrichment for miRNA Expression DataJames M. Ward | James M. Ward | software | 28 Apr 2026 | 734 | 1 |
| rsbml R support for SBML, using libsbmlMichael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 711 | 8 |
| occugene Functions for Multinomial Occupancy DistributionOliver Will | Oliver Will | software | 28 Apr 2026 | 671 | 0 |
| BSgenome.Mmusculus.UCSC.mm39 Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 669 | 58 |