Packages
174 packages on Bioconductor tagged ExperimentData or Mus_musculus or DataImport, most distinct IPs first
ExperimentData, Mus_musculus and DataImport in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| rhdf5 R Interface to HDF5Hugo Gruson | Hugo Gruson | software | 14 Sep 2026 | 27,620 | 8 |
| rtracklayer R interface to genome annotation files and the UCSC genome browserMichael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 26,119 | 56 |
| GEOquery Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis | Sean Davis | software | 25 Oct 2026 | 15,960 | 73 |
| org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 13,520 | 42 |
| affyio Tools for parsing Affymetrix data filesBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 10,615 | 1 |
| ShortRead FASTQ input and manipulationBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 8,126 | 53 |
| oligo Preprocessing tools for oligonucleotide arraysBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 4,087 | 52 |
| affxparser Affymetrix File Parsing SDKKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 3,327 | 0 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| ChemmineR Cheminformatics Toolkit for RThomas Girke | Thomas Girke | software | 28 Apr 2026 | 1,854 | 65 |
| chipseq chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 1,626 | 54 |
| GeneRegionScan GeneRegionScanLasse Folkersen | Lasse Folkersen | software | 28 Apr 2026 | 1,389 | 18 |
| aCGH Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov | Peter Dimitrov | software | 28 Apr 2026 | 1,323 | 17 |
| makecdfenv CDF Environment MakerJames W. MacDonald | James W. MacDonald | software | 28 Apr 2026 | 1,320 | 12 |
| puma Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu | Xuejun Liu | software | 28 Apr 2026 | 1,296 | 55 |
| codelink Manipulation of Codelink microarray dataDiego Diez | Diego Diez | software | 28 Apr 2026 | 1,296 | 47 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,194 | 55 |
| ArrayExpress Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSetJose Marugan | Jose Marugan | software | 28 Apr 2026 | 1,175 | 63 |
| limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,165 | 11 |
| mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,058 | 43 |
| genomeIntervals Operations on genomic intervalsJulien Gagneur | Julien Gagneur | software | 28 Apr 2026 | 1,004 | 12 |
| ctc Cluster and Tree Conversion.Antoine Lucas | Antoine Lucas | software | 28 Apr 2026 | 979 | 1 |
| EnsDb.Mmusculus.v79 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 955 | 81 |
| mouse4302cdf mouse4302cdfBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 944 | 42 |
| HELP Tools for HELP data analysisReid F. Thompson | Reid F. Thompson | software | 28 Apr 2026 | 932 | 8 |
| TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 893 | 75 |