Packages
171 packages on Bioconductor tagged ExperimentData or Mus_musculus or Annotation, most distinct IPs first
ExperimentData, Mus_musculus and Annotation in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| AnnotationDbi Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 47,941 | 41 |
| GOSemSim GO-terms Semantic Similarity MeasuresGuangchuang Yu | Guangchuang Yu | software | 30 Jun 2026 | 27,495 | 48 |
| rtracklayer R interface to genome annotation files and the UCSC genome browserMichael Lawrence | Michael Lawrence | software | 28 Apr 2026 | 26,119 | 56 |
| biomaRt Interface to BioMart databases (i.e. Ensembl)Hugo Gruson | Hugo Gruson | software | 28 Apr 2026 | 24,571 | 61 |
| annotate Annotation for microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 22,557 | 44 |
| BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 14,375 | 57 |
| org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 13,520 | 42 |
| topGO Enrichment Analysis for Gene OntologyFederico Marini | Federico Marini | software | 28 Apr 2026 | 3,228 | 48 |
| GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,437 | 63 |
| Category Category AnalysisBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,355 | 57 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| msdata Various Mass Spectrometry raw data example filesSteffen Neumann | Steffen Neumann | experiment | 5 May 2026 | 1,252 | 0 |
| pdInfoBuilder Platform Design Information Package BuilderBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 1,175 | 53 |
| annaffy Annotation tools for Affymetrix biological metadataColin A. Smith | Colin A. Smith | software | 28 Apr 2026 | 1,173 | 44 |
| altcdfenvs alternative CDF environments (aka probeset mappings)Laurent Gautier | Laurent Gautier | software | 28 Apr 2026 | 1,113 | 23 |
| ecolitk Meta-data and tools for E. coliLaurent Gautier | Laurent Gautier | software | 28 Apr 2026 | 1,087 | 7 |
| goProfiles goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez | Alex Sanchez | software | 28 Apr 2026 | 1,065 | 47 |
| mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,058 | 43 |
| EnsDb.Mmusculus.v79 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 955 | 81 |
| annotationTools Annotate microarrays and perform cross-species gene expression analyses using flat file databasesAlexandre Kuhn | Alexandre Kuhn | software | 28 Apr 2026 | 944 | 7 |
| mouse4302cdf mouse4302cdfBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 944 | 42 |
| TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 893 | 75 |
| ChAMPdata Data Packages for ChAMP packageYuan Tian | Yuan Tian | experiment | 5 May 2026 | 816 | 11 |
| xmapbridge Export plotting files to the xmapBridge for visualisation in X:MapChris Wirth | Chris Wirth | software | 28 Apr 2026 | 776 | 1 |
| miRNApath miRNApath: Pathway Enrichment for miRNA Expression DataJames M. Ward | James M. Ward | software | 28 Apr 2026 | 734 | 1 |
| occugene Functions for Multinomial Occupancy DistributionOliver Will | Oliver Will | software | 28 Apr 2026 | 671 | 0 |
| BSgenome.Mmusculus.UCSC.mm39 Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 669 | 58 |
| RBioinf RBioinf | no date on record | 662 | |||
| RforProteomics Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto | Laurent Gatto | experiment | 5 May 2026 | 566 | 144 |