Packages
74 packages on Bioconductor tagged Normalization or CancerData, most distinct IPs first
Normalization and CancerData in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| DESeq2 Differential gene expression analysis based on the negative binomial distributionMichael Love | Michael Love | software | 28 Apr 2026 | 32,072 | 54 |
| sva Surrogate Variable AnalysisJeffrey T. Leek | Jeffrey T. Leek | software | 5 May 2026 | 10,804 | 68 |
| ALL A data packageRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 4,171 | 7 |
| minfi Analyze Illumina Infinium DNA methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 4,041 | 143 |
| metagenomeSeq Statistical analysis for sparse high-throughput sequencingJoseph N. Paulson | Joseph N. Paulson | software | 28 Apr 2026 | 2,924 | 32 |
| DiffBind Differential Binding Analysis of ChIP-Seq Peak DataRory Stark | Rory Stark | software | 21 Jul 2026 | 2,490 | 141 |
| bcellViper Human B-cell transcriptional interactome and normal human B-cell expression dataMariano Javier Alvarez | Mariano Javier Alvarez | experiment | 5 May 2026 | 2,177 | 7 |
| ChAMP Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPICYuan Tian | Yuan Tian | software | 28 Apr 2026 | 1,643 | 266 |
| MSstats Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi | Meena Choi | software | 28 Apr 2026 | 1,586 | 100 |
| ACME Algorithms for Calculating Microarray Enrichment (ACME)Sean Davis | Sean Davis | software | 28 Apr 2026 | 1,278 | 7 |
| golubEsets exprSets for golub leukemia dataVince Carey | Vince Carey | experiment | 5 May 2026 | 1,207 | 7 |
| affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,194 | 55 |
| limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth | Gordon Smyth | software | 28 Apr 2026 | 1,165 | 11 |
| HTSFilter Filter replicated high-throughput transcriptome sequencing dataAndrea Rau | Andrea Rau | software | 28 Apr 2026 | 1,128 | 58 |
| CAGEr Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome miningCharles Plessy | Charles Plessy | software | 28 Apr 2026 | 1,109 | 174 |
| bladderbatch Bladder gene expression data illustrating batch effectsJeffrey T. Leek | Jeffrey T. Leek | experiment | 5 May 2026 | 1,049 | 7 |
| TurboNorm A fast scatterplot smoother suitable for microarray normalizationMaarten van Iterson | Maarten van Iterson | software | 28 Apr 2026 | 1,006 | 18 |
| GSVAdata Data employed in the vignette of the GSVA packageRobert Castelo | Robert Castelo | experiment | 28 Jul 2026 | 955 | 78 |
| MANOR CGH Micro-Array NORmalizationPierre Neuvial | Pierre Neuvial | software | 28 Apr 2026 | 855 | 9 |
| CNAnorm A normalization method for Copy Number Aberration in cancer samplesStefano Berri | Stefano Berri | software | 28 Apr 2026 | 808 | 2 |
| Illumina450ProbeVariants.db Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probesTiffany Morris | Tiffany Morris | experiment | 5 May 2026 | 690 | 0 |
| lungExpression ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paperRobert Scharpf | Robert Scharpf | experiment | 5 May 2026 | 682 | 7 |
| gageData Auxillary data for gage packageWeijun Luo | Weijun Luo | experiment | 5 May 2026 | 623 | 0 |
| yeastCC Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray dataSandrine Dudoit | Sandrine Dudoit | experiment | 5 May 2026 | 592 | 7 |
| ALLMLL A subset of arrays from a large acute lymphoblastic leukemia (ALL) studyB. M. Bolstad | B. M. Bolstad | experiment | 5 May 2026 | 590 | 12 |
| h5vcData Example data for the h5vc packagePaul Theodor Pyl | Paul Theodor Pyl | experiment | 5 May 2026 | 587 | 0 |
| DLBCL Diffuse large B-cell lymphoma expression dataMarcus Dittrich | Marcus Dittrich | experiment | 5 May 2026 | 568 | 9 |
| CLL A Package for CLL Gene Expression DataRobert Gentleman | Robert Gentleman | experiment | 5 May 2026 | 508 | 12 |