Packages
982 packages on Bioconductor tagged AnnotationData or Pathways or Clustering, most distinct IPs first
AnnotationData, Pathways and Clustering in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer | Bioconductor Maintainer | annotation | no date on record | 36,797 | 0 |
| GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 33,694 | 42 |
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 29,813 | 42 |
| clusterProfiler A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu | Guangchuang Yu | software | 19 Oct 2026 | 29,661 | 138 |
| DOSE Disease Ontology Semantic and Enrichment analysisGuangchuang Yu | Guangchuang Yu | software | 28 Apr 2026 | 28,873 | 77 |
| GOSemSim GO-terms Semantic Similarity MeasuresGuangchuang Yu | Guangchuang Yu | software | 30 Jun 2026 | 27,495 | 48 |
| annotate Annotation for microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 22,557 | 44 |
| org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 13,520 | 42 |
| GSEABase Gene set enrichment data structures and methodsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 13,344 | 46 |
| GSVA Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo | Robert Castelo | software | 25 Oct 2026 | 12,758 | 97 |
| phyloseq Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie | Paul J. McMurdie | software | 28 Apr 2026 | 8,379 | 66 |
| reactome.db A set of annotation maps for reactomeWillem Ligtenberg | Willem Ligtenberg | annotation | no date on record | 7,578 | 42 |
| graphite GRAPH Interaction from pathway Topological EnvironmentGabriele Sales | Gabriele Sales | software | 28 Apr 2026 | 7,012 | 48 |
| KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorJitao David Zhang | Jitao David Zhang | software | 28 Apr 2026 | 6,807 | 14 |
| ReactomePA Reactome Pathway AnalysisGuangchuang Yu | Guangchuang Yu | software | 28 Apr 2026 | 6,720 | 141 |
| DirichletMultinomial Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome DataMartin Morgan | Martin Morgan | software | 28 Sep 2026 | 6,490 | 9 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu | Erqiang Hu | annotation | no date on record | 5,277 | 42 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| DECIPHER Tools for curating, analyzing, and manipulating biological sequencesErik Wright | Erik Wright | software | 30 Jul 2026 | 4,882 | 16 |
| hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,227 | 43 |
| ConsensusClusterPlus ConsensusClusterPlusMatt Wilkerson | Matt Wilkerson | software | 28 Apr 2026 | 3,965 | 10 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer | Johannes Rainer | annotation | no date on record | 3,389 | 81 |
| topGO Enrichment Analysis for Gene OntologyFederico Marini | Federico Marini | software | 28 Apr 2026 | 3,228 | 48 |
| org.Rn.eg.db Genome wide annotation for RatBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,202 | 42 |
| IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen | Kasper Daniel Hansen | annotation | no date on record | 2,852 | 144 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |