R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: SingleCell or SequencingData or Preprocessing

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter

First letter

Release: Release 2.1 (2007)

In the current release or not

Bioconductor release

Clear all

49 packages on Bioconductor tagged SingleCell or SequencingData or Preprocessing, most distinct IPs first

SingleCell, SequencingData and Preprocessing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
affy
Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear		Robert D. Shearsoftware28 Apr 202610,55611
vsn
Variance stabilization and calibration for microarray dataWolfgang Huber		Wolfgang Hubersoftware28 Apr 20267,53633
oligo
Preprocessing tools for oligonucleotide arraysBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20264,08752
marray
Exploratory analysis for two-color spotted microarray dataYee Hwa (Jean) Yang		Yee Hwa (Jean) Yangsoftware28 Apr 20263,3117
aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson		Henrik Bengtssonsoftware28 Apr 20262,4818
lumi
BeadArray Specific Methods for Illumina Methylation and Expression MicroarraysLei Huang		Lei Huangsoftware28 Apr 20262,454165
affyPLM
Methods for fitting probe-level modelsBen Bolstad		Ben Bolstadsoftware28 Apr 20262,43022
Mfuzz
Soft clustering of omics time series dataMatthias Futschik		Matthias Futschiksoftware28 Apr 20262,35316
gcrma
Background Adjustment Using Sequence InformationZ. Wu		Z. Wusoftware28 Apr 20262,28521
beadarray
Quality assessment and low-level analysis for Illumina BeadArray dataMark Dunning		Mark Dunningsoftware31 Aug 20261,74065
affycomp
Graphics Toolbox for Assessment of Affymetrix Expression MeasuresRobert D. Shear		Robert D. Shearsoftware28 Apr 20261,3397
makecdfenv
CDF Environment MakerJames W. MacDonald		James W. MacDonaldsoftware28 Apr 20261,32012
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,29655
codelink
Manipulation of Codelink microarray dataDiego Diez		Diego Diezsoftware28 Apr 20261,29647
tilingArray
Transcript mapping with high-density oligonucleotide tiling arraysZhenyu Xu		Zhenyu Xusoftware28 Apr 20261,24974
CGHcall
Calling aberrations for array CGH tumor profiles.Mark van de Wiel		Mark van de Wielsoftware28 Apr 20261,23016
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
OLIN
Optimized local intensity-dependent normalisation of two-color microarraysMatthias Futschik		Matthias Futschiksoftware28 Apr 20261,12311
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
ABarray
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.Yongming Andrew Sun		Yongming Andrew Sunsoftware28 Apr 202699217
OLINgui
Graphical user interface for OLINMatthias Futschik		Matthias Futschiksoftware28 Apr 202686417
MANOR
CGH Micro-Array NORmalizationPierre Neuvial		Pierre Neuvialsoftware28 Apr 20268559
nnNorm
Spatial and intensity based normalization of cDNA microarray data based on robust neural netsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20268539
maCorrPlot
Visualize artificial correlation in microarray dataAlexander Ploner		Alexander Plonersoftware28 Apr 20268216
stepNorm
Stepwise normalization functions for cDNA microarraysYuanyuan Xiao		Yuanyuan Xiaosoftware28 Apr 20268039
genArise
Microarray Analysis toolIFC Development Team		IFC Development Teamsoftware28 Apr 202679911
cellHTS2
Analysis of cell-based screens - revised version of cellHTS		no date on record778
Ringo
R Investigation of ChIP-chip Oligoarrays		no date on record764