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Topic: Transcription or AffymetrixChip or Infrastructure

biocViews term

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Release: Release 1.9 (2006)

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379 packages on Bioconductor tagged Transcription or AffymetrixChip or Infrastructure, most distinct IPs first

Transcription, AffymetrixChip and Infrastructure in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Biobase
Biobase: Base functions for BioconductorBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202664,5556
Biostrings
Efficient manipulation of biological stringsHervé Pagès		Hervé Pagèssoftware2 Sep 202658,96214
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
rhdf5
R Interface to HDF5Hugo Gruson		Hugo Grusonsoftware14 Sep 202627,6208
GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis		Sean Davissoftware25 Oct 202615,96073
BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès		Hervé Pagèssoftware28 Apr 202614,37557
affyio
Tools for parsing Affymetrix data filesBen Bolstad		Ben Bolstadsoftware28 Apr 202610,6151
biocViews
Categorized views of R package repositoriesBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20265,92717
hgu133plus2.db
Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record4,22743
oligo
Preprocessing tools for oligonucleotide arraysBenilton Carvalho		Benilton Carvalhosoftware28 Apr 20264,08752
affxparser
Affymetrix File Parsing SDKKasper Daniel Hansen		Kasper Daniel Hansensoftware28 Apr 20263,3270
tkWidgets
R based tk widgetsJ. Zhang		J. Zhangsoftware28 Apr 20262,7636
widgetTools
Creates an interactive tcltk widgetJianhua Zhang		Jianhua Zhangsoftware28 Apr 20262,6363
DynDoc
Dynamic document toolsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,5142
aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data TypesHenrik Bengtsson		Henrik Bengtssonsoftware28 Apr 20262,4818
hgu133a.db
Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,99643
hgu133plus2cdf
hgu133plus2cdfBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,61842
hgu95av2.db
Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,60543
aCGH
Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov		Peter Dimitrovsoftware28 Apr 20261,32317
makecdfenv
CDF Environment MakerJames W. MacDonald		James W. MacDonaldsoftware28 Apr 20261,32012
hugene10sttranscriptcluster.db
Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer		Biocore Package Maintainerannotationno date on record1,30243
codelink
Manipulation of Codelink microarray dataDiego Diez		Diego Diezsoftware28 Apr 20261,29647
hgu95av2cdf
hgu95av2cdfBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,21742
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,19455
Icens
NPMLE for Censored and Truncated DataBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20261,19110
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 20261,16511
hgu95av2probe
Probe sequence data for microarrays of type hgu95av2Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,16442
altcdfenvs
alternative CDF environments (aka probeset mappings)Laurent Gautier		Laurent Gautiersoftware28 Apr 20261,11323
panp
Presence-Absence Calls from Negative Strand Matching ProbesetsPeter Warren		Peter Warrensoftware28 Apr 20261,06612
mouse4302.db
Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,05843