Packages
1,065 packages on Bioconductor, most distinct IPs first
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| Biobase Biobase: Base functions for BioconductorBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 64,555 | 6 |
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| AnnotationDbi Manipulation of SQLite-based annotations in BioconductorBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 47,941 | 41 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| GenomeInfoDbData Species and taxonomy ID look up tables used by GenomeInfoDbBioconductor Maintainer | Bioconductor Maintainer | annotation | no date on record | 36,797 | 0 |
| GO.db A set of annotation maps describing the entire Gene OntologyBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 33,694 | 42 |
| org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 29,813 | 42 |
| qvalue Q-value estimation for false discovery rate controlJohn D. Storey | John D. Storey | software | 28 Apr 2026 | 27,745 | 31 |
| rhdf5 R Interface to HDF5Hugo Gruson | Hugo Gruson | software | 14 Sep 2026 | 27,620 | 8 |
| graph graph: A package to handle graph data structuresBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 25,655 | 7 |
| biomaRt Interface to BioMart databases (i.e. Ensembl)Hugo Gruson | Hugo Gruson | software | 28 Apr 2026 | 24,571 | 61 |
| annotate Annotation for microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 22,557 | 44 |
| GEOquery Get data from NCBI Gene Expression Omnibus (GEO)Sean Davis | Sean Davis | software | 25 Oct 2026 | 15,960 | 73 |
| genefilter genefilter: methods for filtering genes from high-throughput experimentsBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 15,340 | 52 |
| impute impute: Imputation for microarray dataBalasubramanian Narasimhan | Balasubramanian Narasimhan | software | 28 Apr 2026 | 14,554 | 0 |
| multtest Resampling-based multiple hypothesis testingKatherine S. Pollard | Katherine S. Pollard | software | 28 Apr 2026 | 14,457 | 15 |
| BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 14,375 | 57 |
| org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 13,520 | 42 |
| Rgraphviz Provides plotting capabilities for R graph objectsKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 11,263 | 10 |
| RBGL An interface to the BOOST graph libraryBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 10,698 | 9 |
| affyio Tools for parsing Affymetrix data filesBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 10,615 | 1 |
| affy Methods for Affymetrix Oligonucleotide ArraysRobert D. Shear | Robert D. Shear | software | 28 Apr 2026 | 10,556 | 11 |
| reactome.db A set of annotation maps for reactomeWillem Ligtenberg | Willem Ligtenberg | annotation | no date on record | 7,578 | 42 |
| vsn Variance stabilization and calibration for microarray dataWolfgang Huber | Wolfgang Huber | software | 28 Apr 2026 | 7,536 | 33 |
| pcaMethods A collection of PCA methodsHenning Redestig | Henning Redestig | software | 28 Apr 2026 | 7,385 | 10 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| biocViews Categorized views of R package repositoriesBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 5,927 | 17 |
| HDO.db A set of annotation maps describing the entire Human Disease OntologyErqiang Hu | Erqiang Hu | annotation | no date on record | 5,277 | 42 |
| DNAcopy DNA Copy Number Data AnalysisVenkatraman E. Seshan | Venkatraman E. Seshan | software | 28 Apr 2026 | 5,054 | 0 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |