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Release: Release 3.7 (2018)

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56 packages on Bioconductor, most distinct IPs first

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
MultiDataSet
Implementation of MultiDataSet and ResultSetXavier Escrib		Xavier Escribsoftware28 Apr 20262,83349
CNEr
CNE Detection and VisualizationBoris Lenhard		Boris Lenhardsoftware28 Apr 20262,692112
ggcyto
Visualize Cytometry data with ggplotMike Jiang		Mike Jiangsoftware28 Apr 20262,08565
viper
Virtual Inference of Protein-activity by Enriched Regulon analysisMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 20262,06087
progeny
Pathway RespOnsive GENes for activity inference from gene expressionAurélien Dugourd		Aurélien Dugourdsoftware28 Apr 20262,01258
MotifDb
An Annotated Collection of Protein-DNA Binding Sequence MotifsPaul Shannon		Paul Shannonsoftware28 Apr 20261,94459
SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20261,83915
DMRcate
Methylation array and sequencing spatial analysis methodsTim Peters		Tim Peterssoftware3 May 20261,838224
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
Rbowtie
R bowtie wrapperMichael Stadler		Michael Stadlersoftware28 Apr 20261,2111
matter
Out-of-core statistical computing and signal processingKylie A. Bemis		Kylie A. Bemissoftware28 Apr 20261,16824
esATAC
An Easy-to-use Systematic pipeline for ATACseq data analysisZheng Wei		Zheng Weisoftware28 Apr 20261,165194
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
bioCancer
Interactive Multi-Omics Cancers Data Visualization and AnalysisKarim Mezhoud		Karim Mezhoudsoftware28 Apr 20261,113273
vidger
Create rapid visualizations of RNAseq data in RBrandon Monier		Brandon Moniersoftware28 Apr 20261,04999
SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)Luca De Sano		Luca De Sanosoftware28 Apr 20261,01014
Rcpi
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug DiscoveryNan Xiao		Nan Xiaosoftware28 Apr 202698957
miRcomp
Tools to assess and compare miRNA expression estimatation methodsMatthew N. McCall		Matthew N. McCallsoftware28 Apr 20269779
CRISPRseek
Design of guide RNAs in CRISPR genome-editing systemsLihua Julie Zhu		Lihua Julie Zhusoftware28 Apr 2026952141
sevenbridges
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in RPhil Webster		Phil Webstersoftware28 Apr 202688331
SparseSignatures
SparseSignaturesLuca De Sano		Luca De Sanosoftware28 Apr 202684997
scoreInvHap
Get inversion status in predefined regionsDolors Pelegri-Siso		Dolors Pelegri-Sisosoftware28 Apr 202681180
genArise
Microarray Analysis toolIFC Development Team		IFC Development Teamsoftware28 Apr 202679911
OncoScore
A tool to identify potentially oncogenic genesLuca De Sano		Luca De Sanosoftware28 Apr 202676662
sights
Statistics and dIagnostic Graphs for HTSElika Garg		Elika Gargsoftware28 Apr 202675534
diggit
Inference of Genetic Variants Driving Cellular PhenotypesMariano J Alvarez		Mariano J Alvarezsoftware28 Apr 202672596
RITAN
Rapid Integration of Term Annotation and Network resourcesMichael Zimmermann		Michael Zimmermannsoftware28 Apr 2026724155
zFPKM
A suite of functions to facilitate zFPKM transformationsRon Ammar		Ron Ammarsoftware28 Apr 202669455
GeneticsPed
Pedigree and genetic relationship functionsDavid Henderson		David Hendersonsoftware28 Apr 202668411