zFPKM
Bioc currentA suite of functions to facilitate zFPKM transformations
v1.34.0
·
software
·
GPL-3 | file LICENSE
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
1.0
In 18 of 49 releases
3.23
Description
Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Code metrics have not been computed for this package yet.
Topics
Depended on by (1)
CRAN (1)
People
- Ron Ammar author maintainer
- John Thompson author