Packages
196 packages on Bioconductor, most distinct IPs first
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| treeio Base Classes and Functions for Phylogenetic Tree Input and OutputGuangchuang Yu | Guangchuang Yu | software | 30 Apr 2026 | 31,966 | 39 |
| TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC dataTiago Chedraoui Silva | Tiago Chedraoui Silva | software | 28 Apr 2026 | 6,750 | 103 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| tximport Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love | Michael Love | software | 28 Apr 2026 | 5,804 | 3 |
| TCGAbiolinksGUI.data Data for the TCGAbiolinksGUI packageTiago Chedraoui Silva | Tiago Chedraoui Silva | experiment | 5 May 2026 | 5,758 | 0 |
| txdbmaker Tools for making TxDb objects from genomic annotationsH. Pagès | H. Pagès | software | 28 Apr 2026 | 5,546 | 97 |
| TFBSTools Software Package for Transcription Factor Binding Site (TFBS) AnalysisGe Tan | Ge Tan | software | 28 Apr 2026 | 4,721 | 79 |
| TrajectoryUtils Single-Cell Trajectory Analysis UtilitiesAaron Lun | Aaron Lun | software | 28 Apr 2026 | 4,611 | 35 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| TreeSummarizedExperiment TreeSummarizedExperiment: a S4 Class for Data with Tree StructuresRuizhu Huang | Ruizhu Huang | software | 28 Apr 2026 | 3,538 | 67 |
| topGO Enrichment Analysis for Gene OntologyFederico Marini | Federico Marini | software | 28 Apr 2026 | 3,228 | 48 |
| tkWidgets R based tk widgetsJ. Zhang | J. Zhang | software | 28 Apr 2026 | 2,763 | 6 |
| tximeta Transcript Quantification Import with Automatic MetadataMichael Love | Michael Love | software | 26 Oct 2026 | 2,485 | 108 |
| tradeSeq trajectory-based differential expression analysis for sequencing dataHector Roux de Bezieux | Hector Roux de Bezieux | software | 28 Apr 2026 | 2,460 | 73 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| trackViewer A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics dataJianhong Ou | Jianhong Ou | software | 28 Apr 2026 | 1,713 | 160 |
| TCGAutils TCGA utility functions for data managementMarcel Ramos | Marcel Ramos | software | 5 Jul 2026 | 1,615 | 103 |
| TOAST Tools for the analysis of heterogeneous tissuesZiyi Li | Ziyi Li | software | 28 Apr 2026 | 1,454 | 102 |
| TSCAN Tools for Single-Cell AnalysisZhicheng Ji | Zhicheng Ji | software | 28 Apr 2026 | 1,370 | 82 |
| tximportData tximportDataMichael Love | Michael Love | experiment | 5 May 2026 | 1,330 | 0 |
| tilingArray Transcript mapping with high-density oligonucleotide tiling arraysZhenyu Xu | Zhenyu Xu | software | 28 Apr 2026 | 1,249 | 74 |
| TPP Analyze thermal proteome profiling (TPP) experimentsDorothee Childs | Dorothee Childs | software | 14 Sep 2026 | 1,221 | 86 |
| TCseq Time course sequencing data analysisMengjun Wu | Mengjun Wu | software | 28 Apr 2026 | 1,181 | 72 |
| tricycle tricycle: Transferable Representation and Inference of cell cycleShijie Zheng | Shijie Zheng | software | 28 Apr 2026 | 1,163 | 111 |
| TxDb.Dmelanogaster.UCSC.dm3.ensGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,161 | 75 |
| TCC TCC: Differential expression analysis for tag count data with robust normalization strategiesJianqiang Sun | Jianqiang Sun | software | 28 Apr 2026 | 1,158 | 64 |
| traseR GWAS trait-associated SNP enrichment analyses in genomic intervalsli chen | li chen | software | 28 Apr 2026 | 1,147 | 59 |
| timecourse Statistical Analysis for Developmental Microarray Time Course DataYu Chuan Tai | Yu Chuan Tai | software | 28 Apr 2026 | 1,111 | 12 |
| TFEA.ChIP TFEA.ChIP, a Tool Kit for Transcription Factor EnrichmentYosra Berrouayel | Yosra Berrouayel | software | 28 Apr 2026 | 1,105 | 106 |
| tidybulk Brings transcriptomics to the tidyverseStefano Mangiola | Stefano Mangiola | software | 28 Apr 2026 | 1,085 | 91 |