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Topic: AffymetrixChip or Proteomics or Annotation

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38 packages on Bioconductor tagged AffymetrixChip or Proteomics or Annotation, most distinct IPs first

AffymetrixChip, Proteomics and Annotation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
SummarizedExperiment
A container (S4 class) for matrix-like assaysHervé Pagès		Hervé Pagèssoftware28 Apr 202653,48424
Seqinfo
A simple S4 class for storing basic information about a collection of genomic sequencesHervé Pagès		Hervé Pagèssoftware28 Apr 202648,5939
SingleR
Reference-Based Single-Cell RNA-Seq AnnotationAaron Lun		Aaron Lunsoftware10 Sep 20266,76128
Spectra
Spectra Infrastructure for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware9 Jun 20264,46530
scRepertoire
A toolkit for single-cell immune receptor profilingNick Borcherding		Nick Borcherdingsoftware28 Apr 20261,571115
simona
Semantic Similarity on Bio-OntologiesZuguang Gu		Zuguang Gusoftware28 Apr 20261,38870
SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to themH. Pagès		H. Pagèssoftware28 Apr 20261,16279
statTarget
Statistical Analysis of Molecular ProfilesHemi Luan		Hemi Luansoftware28 Apr 202690526
sevenC
Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifsJonas Ibn-Salem		Jonas Ibn-Salemsoftware28 Apr 202690183
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
specL
specL - Prepare Peptide Spectrum Matches for Use in Targeted ProteomicsChristian Panse		Christian Pansesoftware28 Apr 202689832
SemDist
Information Accretion-based Function Predictor EvaluationIan Gonzalez		Ian Gonzalezsoftware28 Apr 202689746
StructuralVariantAnnotation
Variant annotations for structural variantsDaniel Cameron		Daniel Cameronsoftware28 Apr 202688590
scp
Mass Spectrometry-Based Single-Cell Proteomics Data AnalysisChristophe Vanderaa		Christophe Vanderaasoftware28 Apr 2026869108
SWATH2stats
Transform and Filter SWATH Data for Statistical PackagesPeter Blattmann		Peter Blattmannsoftware28 Apr 202679476
SBGNview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"Weijun Luo		Weijun Luosoftware28 Apr 202679285
SubCellBarCode
SubCellBarCode: Integrated workflow for robust mapping and visualizing whole human spatial proteomeTaner Arslan		Taner Arslansoftware28 Apr 2026758133
svaRetro
Retrotransposed transcript detection from structural variantsRuining Dong		Ruining Dongsoftware28 Apr 202673391
SpatialOmicsOverlay
Spatial Overlay for Omic Data from Nanostring GeoMx DataMaddy Griswold		Maddy Griswoldsoftware28 Apr 2026705159
svaNUMT
NUMT detection from structural variant callsRuining Dong		Ruining Dongsoftware28 Apr 202669091
SDAMS
Differential Abundant/Expression Analysis for Metabolomics, Proteomics and single-cell RNA sequencing DataYuntong Li		Yuntong Lisoftware28 Apr 202668951
SMAD
Statistical Modelling of AP-MS Data (SMAD)Qingzhou Zhang		Qingzhou Zhangsoftware28 Apr 202659330
sparsenetgls
Using Gaussian graphical structue learning estimation in generalized least squared regression for multivariate normal regressionIrene Zeng		Irene Zengsoftware28 Apr 202659029
SCANVIS
SCANVIS - a tool for SCoring, ANnotating and VISualizing splice junctionsPhaedra Agius		Phaedra Agiussoftware28 Apr 202658358
scDiagnostics
Cell type annotation diagnosticsAnthony Christidis		Anthony Christidissoftware9 Jul 202658290
SpectriPy
Enhancing Cross-Language Mass Spectrometry Data Analysis with R and PythonJohannes Rainer		Johannes Rainersoftware12 May 202650851
soybeancdf
soybeancdfBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record48742
squallms
Speedy quality assurance via lasso labeling for LC-MS dataWilliam Kumler		William Kumlersoftware28 Apr 2026473186
SpectraQL
MassQL support for SpectraJohannes Rainer		Johannes Rainersoftware29 Apr 202645831
Site2Target
An R package to associate peaks and target genesPeyman Zarrineh		Peyman Zarrinehsoftware28 Apr 202643224