SpectriPy
Bioc currentEnhancing Cross-Language Mass Spectrometry Data Analysis with R and Python
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
The SpectriPy package allows integration of Python-based MS analysis code with the Spectra package. Spectra objects can be converted into Python MS data structures. In addition, SpectriPy integrates and wraps the similarity scoring and processing/filtering functions from the Python matchms package into R.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
64 17 exported
Complexity
2 avg / 10 max
Call network
64 nodes / 33 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,835
Files
54
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
19
Internal functions
41
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.79
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
22.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
3
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2026-03-04
Latest release
2026-05-12
Avg cadence
69 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Johannes Rainer author maintainer
- Matthias Anagho-Mattanovich contributor
- Wout Bittremieux author
- Victor Chrone contributor
- Marilyn De Graeve author
- Helge Hecht contributor
- Carolin Huber author
- Philippine Louail contributor
- Pierre Marchal contributor
- Thomas Naake author
- Michael Witting author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("SpectriPy")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.