SpectriPy
Bioc currentEnhancing Cross-Language Mass Spectrometry Data Analysis with R and Python
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
The SpectriPy package allows integration of Python-based MS analysis code with the Spectra package. Spectra objects can be converted into Python MS data structures. In addition, SpectriPy integrates and wraps the similarity scoring and processing/filtering functions from the Python matchms package into R.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
64 17 exported
Complexity
2 avg / 10 max
Call network
64 nodes / 33 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
7,835
Files
26
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
19
Internal functions
41
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.79
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
22.2%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
3 externalpython (>= 3.12), pandoc, quarto
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2026-03-04
Latest release
2026-05-12
Avg cadence
69 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 5
- Examples that run
- 100%5 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Synchronize code base with devel version.
From NEWS.md in the release
Repository practices
8 development-tooling and community-health practices detected across 5 families in the upstream repository
Checks run against github.com/rformassspectrometry/spectripy on 2026-10-18.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-05-12 · The repository has a site deploy workflow
Show all practicesHide 1 practice
Topics
People
- Johannes Rainer author maintainer
- Matthias Anagho-Mattanovich contributor
- Wout Bittremieux author
- Victor Chrone contributor
- Marilyn De Graeve author
- Helge Hecht contributor
- Carolin Huber author
- Philippine Louail contributor
- Pierre Marchal contributor
- Thomas Naake author
- Michael Witting author
Cite
Cite this package
Run in R for the authors' entry:
citation("SpectriPy")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.21105/joss.08070.
The repository also keeps a CITATION.cff.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.