Packages
355 packages on Bioconductor, most distinct IPs first
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| preprocessCore A collection of pre-processing functionsBen Bolstad | Ben Bolstad | software | 28 Apr 2026 | 19,020 | 1 |
| ProtGenerics Generic infrastructure for Bioconductor mass spectrometry packagesLaurent Gatto | Laurent Gatto | software | 28 Apr 2026 | 13,018 | 1 |
| phyloseq Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie | Paul J. McMurdie | software | 28 Apr 2026 | 8,379 | 66 |
| pcaMethods A collection of PCA methodsHenning Redestig | Henning Redestig | software | 28 Apr 2026 | 7,385 | 10 |
| pathview a tool set for pathway based data integration and visualizationWeijun Luo | Weijun Luo | software | 28 Apr 2026 | 5,706 | 50 |
| progeny Pathway RespOnsive GENes for activity inference from gene expressionAurélien Dugourd | Aurélien Dugourd | software | 28 Apr 2026 | 2,012 | 58 |
| plyranges A fluent interface for manipulating GenomicRangesMichael Love | Michael Love | software | 28 Apr 2026 | 1,930 | 70 |
| PCAtools PCAtools: Everything Principal Components AnalysisJared Andrews | Jared Andrews | software | 28 Apr 2026 | 1,889 | 65 |
| pRoloc A unifying bioinformatics framework for spatial proteomicsLisa Breckels | Lisa Breckels | software | 28 Apr 2026 | 1,689 | 230 |
| pasilla Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes | Alejandro Reyes | experiment | 5 May 2026 | 1,554 | 108 |
| piano Platform for integrative analysis of omics dataLeif Varemo Wigge | Leif Varemo Wigge | software | 28 Apr 2026 | 1,509 | 94 |
| PureCN Copy number calling and SNV classification using targeted short read sequencingMarkus Riester | Markus Riester | software | 28 Apr 2026 | 1,356 | 101 |
| PharmacoGx Analysis of Large-Scale Pharmacogenomic DataBenjamin Haibe-Kains | Benjamin Haibe-Kains | software | 28 Apr 2026 | 1,325 | 143 |
| puma Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu | Xuejun Liu | software | 28 Apr 2026 | 1,296 | 55 |
| PWMEnrich PWM enrichment analysisDiego Diez | Diego Diez | software | 28 Apr 2026 | 1,219 | 20 |
| pcaExplorer Interactive Visualization of RNA-seq Data Using a Principal Components ApproachFederico Marini | Federico Marini | software | 28 Apr 2026 | 1,192 | 230 |
| pdInfoBuilder Platform Design Information Package BuilderBenilton Carvalho | Benilton Carvalho | software | 28 Apr 2026 | 1,175 | 53 |
| podkat Position-Dependent Kernel Association TestUlrich Bodenhofer | Ulrich Bodenhofer | software | 28 Apr 2026 | 1,143 | 59 |
| phenoTest Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.Evarist Planet | Evarist Planet | software | 28 Apr 2026 | 1,104 | 139 |
| pandaR PANDA AlgorithmJoseph N. Paulson | Joseph N. Paulson | software | 28 Apr 2026 | 1,093 | 37 |
| PAA PAA (Protein Array Analyzer)Michael Turewicz | Michael Turewicz | software | 28 Apr 2026 | 1,084 | 84 |
| PREDA Position Related Data AnalysisFrancesco Ferrari | Francesco Ferrari | software | 28 Apr 2026 | 1,079 | 54 |
| psichomics Graphical Interface for Alternative Splicing Quantification, Analysis and VisualisationNuno Saraiva-Agostinho | Nuno Saraiva-Agostinho | software | 31 May 2026 | 1,070 | 205 |
| panp Presence-Absence Calls from Negative Strand Matching ProbesetsPeter Warren | Peter Warren | software | 28 Apr 2026 | 1,066 | 12 |
| plgem Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka | Norman Pavelka | software | 28 Apr 2026 | 1,047 | 9 |
| PFAM.db A set of protein ID mappings for PFAMBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,038 | 42 |
| proDA Differential Abundance Analysis of Label-Free Mass Spectrometry DataConstantin Ahlmann-Eltze | Constantin Ahlmann-Eltze | software | 28 Apr 2026 | 1,034 | 28 |
| pqsfinder Identification of potential quadruplex forming sequencesJiri Hon | Jiri Hon | software | 28 Apr 2026 | 1,028 | 18 |
| PADOG Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)Adi L. Tarca | Adi L. Tarca | software | 28 Apr 2026 | 1,026 | 59 |
| procoil Prediction of Oligomerization of Coiled Coil ProteinsUlrich Bodenhofer | Ulrich Bodenhofer | software | 28 Apr 2026 | 1,006 | 26 |