PWMEnrich
Bioc currentPWM enrichment analysis
Release Lineage
Entered 2.11 · Oct 3, 2012
Current · Requires R 4.6
Description
A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
66 25 exported
Complexity
6.4 avg / 32 max
Call network
66 nodes / 87 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,169
Files
130
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
41
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
LGPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
28
First release
2012-10-01
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 95 (1 internal)includes a package overview page
- Examples that run
- 63%19 run in a plain check (16 of them under a condition) · 11 never run
- Exported functions with examples
- 88%
- Documented parameters
- 93%
- Return-value docs
- 36%
- Help pages citing references
- 3%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
Topics
Depended on by (3)
Bioconductor (3)
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("PWMEnrich")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.