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Topic: MassSpectrometry or RNASeq or DataRepresentation

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83 packages on Bioconductor tagged MassSpectrometry or RNASeq or DataRepresentation, most distinct IPs first

MassSpectrometry, RNASeq and DataRepresentation in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
MultiAssayExperiment
Software for the integration of multi-omics experiments in BioconductorMarcel Ramos		Marcel Ramossoftware28 Apr 20269,52345
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
MsCoreUtils
Core Utils for Mass Spectrometry DataRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware28 Apr 20265,02413
mzID
An mzIdentML parser for RLaurent Gatto		Laurent Gattosoftware28 Apr 20264,53211
monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqCole Trapnell		Cole Trapnellsoftware28 Apr 20264,48574
MetaboCoreUtils
Core Utils for Metabolomics DataJohannes Rainer		Johannes Rainersoftware30 Apr 20263,94024
MAST
Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid		Andrew McDavidsoftware28 Apr 20263,74056
maftools
Summarize, Analyze and Visualize MAF FilesAnand Mayakonda		Anand Mayakondasoftware28 Apr 20263,52326
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
MultiDataSet
Implementation of MultiDataSet and ResultSetXavier Escrib		Xavier Escribsoftware28 Apr 20262,83349
MsFeatures
Functionality for Mass Spectrometry FeaturesJohannes Rainer		Johannes Rainersoftware28 Apr 20262,50531
MsExperiment
Infrastructure for Mass Spectrometry ExperimentsLaurent Gatto		Laurent Gattosoftware28 Apr 20262,287112
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi		Meena Choisoftware28 Apr 20261,586100
mbkmeans
Mini-batch K-means Clustering for Single-Cell RNA-seqDavide Risso		Davide Rissosoftware28 Apr 20261,40284
MsBackendMgf
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) FilesRforMassSpectrometry Package Maintainer		RforMassSpectrometry Package Maintainersoftware26 Jul 20261,34031
MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics IdentificationsVlad Petyuk		Vlad Petyuksoftware28 Apr 20261,236169
MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats FormatAnthony Wu		Anthony Wusoftware19 Jul 20261,19410
matter
Out-of-core statistical computing and signal processingKylie A. Bemis		Kylie A. Bemissoftware28 Apr 20261,16824
MiRaGE
MiRNA Ranking by Gene ExpressionY-h. Taguchi		Y-h. Taguchisoftware28 Apr 20261,14143
MCbiclust
Massive correlating biclusters for gene expression data and associated methodsRobert Bentham		Robert Benthamsoftware28 Apr 20261,078125
M3C
Monte Carlo Reference-based Consensus ClusteringChristopher John		Christopher Johnsoftware28 Apr 20261,04450
MSstatsTMT
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labelingDevon Kohler		Devon Kohlersoftware28 Apr 20261,044103
M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeqTallulah Andrews		Tallulah Andrewssoftware28 Apr 20261,017153
metaMS
MS-based metabolomics annotation pipelineYann Guitton		Yann Guittonsoftware28 Apr 20261,016160
MOSim
Multi-Omics Simulation (MOSim)Sonia Tarazona		Sonia Tarazonasoftware28 Apr 2026997197
msqrob2
Robust statistical inference for quantitative LC-MS proteomicsLieven Clement		Lieven Clementsoftware28 Apr 2026992122
MetNet
Inferring metabolic networks from untargeted high-resolution mass spectrometry dataThomas Naake		Thomas Naakesoftware28 Apr 202696477
MLSeq
Machine Learning Interface for RNA-Seq DataGokmen Zararsiz		Gokmen Zararsizsoftware28 Apr 2026940134
metaSeq
Meta-analysis of RNA-Seq count data in multiple studiesKoki Tsuyuzaki		Koki Tsuyuzakisoftware28 Apr 202693815