MOSim
Bioc currentMulti-Omics Simulation (MOSim)
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
50 28 exported
Complexity
6.2 avg / 48 max
Call network
50 nodes / 28 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
10,241
Files
77
Compiled share
0.6%
Has compiled src
Yes
Language breakdown
API
Exported functions
28
Internal functions
19
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2020-04-03
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
12
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 39 (4 internal)includes a package overview page
- Examples that run
- 100%18 run in a plain check
- Exported functions with examples
- 64%
- Documented parameters
- 100%
- Return-value docs
- 86%
- Help pages citing references
- 0%
Repository practices
Checks run against github.com/conesalab/mosim on 2026-10-18.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| TF_human | data.frame | 16,634 × 2 | No other package |
| associationList | data.frame | 10,000 × 2 | No other package |
| sampleData | – | – | – |
| scatac | matrix | 108,377 × 40 | No other package |
| scrna | matrix | 36,601 × 40 | No other package |
Topics
People
- Sonia Tarazona maintainer author
- Carlos Martínez author
- Carolina Monzó author
Cite
Cite this package
Run in R for the authors' entry:
citation("MOSim")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.