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Topic: RNASeq or ChipDb or GeneSetEnrichment

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47 packages on Bioconductor tagged RNASeq or ChipDb or GeneSetEnrichment, most distinct IPs first

RNASeq, ChipDb and GeneSetEnrichment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
GenomicAlignments
Representation and manipulation of short genomic alignmentsHervé Pagès		Hervé Pagèssoftware28 Apr 202627,00641
GSEABase
Gene set enrichment data structures and methodsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202613,34446
GSVA
Gene Set Variation Analysis for Microarray and RNA-Seq DataRobert Castelo		Robert Castelosoftware25 Oct 202612,75897
glmGamPoi
Fit a Gamma-Poisson Generalized Linear ModelConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware28 Apr 20267,00046
GOstats
Tools for manipulating GO and microarraysBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20262,43763
goseq
Gene Ontology analyser for RNA-seq and other length biased dataFederico Marini		Federico Marinisoftware28 Apr 20262,404104
gage
Generally Applicable Gene-set Enrichment for Pathway AnalysisWeijun Luo		Weijun Luosoftware28 Apr 20261,92944
Glimma
Interactive visualizations for gene expression analysisShian Su		Shian Susoftware18 Jun 20261,87080
gCrisprTools
Suite of Functions for Pooled Crispr Screen QC and AnalysisRussell Bainer		Russell Bainersoftware28 Apr 20261,17481
GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, mRNA, and miRNA data in GDCRuidong Li		Ruidong Lisoftware28 Apr 20261,097235
goProfiles
goProfiles: an R package for the statistical analysis of functional profilesAlex Sanchez		Alex Sanchezsoftware28 Apr 20261,06547
GOexpress
Visualise microarray and RNAseq data using gene ontology annotationsKevin Rue-Albrecht		Kevin Rue-Albrechtsoftware28 Apr 20261,04579
GRaNIE
GRaNIE: Reconstruction cell type specific gene regulatory networks including enhancers using single-cell or bulk chromatin accessibility and RNA-seq dataChristian Arnold		Christian Arnoldsoftware28 Apr 20261,025151
GeneTonic
Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment AnalysisFederico Marini		Federico Marinisoftware28 Apr 20261,022224
Guitar
GuitarJia Meng		Jia Mengsoftware28 Apr 20261,02095
GeomxTools
NanoString GeoMx ToolsMaddy Griswold		Maddy Griswoldsoftware28 Apr 20261,009123
GSRI
Gene Set Regulation IndexJulian Gehring		Julian Gehringsoftware28 Apr 202693664
GenomicSuperSignature
Interpretation of RNA-seq experiments through robust, efficient comparison to public databasesSehyun Oh		Sehyun Ohsoftware28 Apr 2026922169
goSTAG
A tool to use GO Subtrees to Tag and Annotate Genes within a setBrian D. Bennett		Brian D. Bennettsoftware28 Apr 202691363
GOpro
Find the most characteristic gene ontology terms for groups of human genesLidia Chrabaszcz		Lidia Chrabaszczsoftware16 Sep 202689588
GOfuncR
Gene ontology enrichment using FUNCSteffi Grote		Steffi Grotesoftware31 Oct 202588651
GeneStructureTools
Tools for spliced gene structure manipulation and analysisBeth Signal		Beth Signalsoftware28 Apr 2026822154
GSEABenchmarkeR
Reproducible GSEA BenchmarkingLudwig Geistlinger		Ludwig Geistlingersoftware28 Apr 2026816109
GWENA
Pipeline for augmented co-expression analysisGwenaëlle Lemoine		Gwenaëlle Lemoinesoftware28 Apr 2026815123
GSReg
Gene Set Regulation (GS-Reg)Bahman Afsari		Bahman Afsarisoftware28 Apr 202680583
GenomicOZone
Delineate outstanding genomic zones of differential gene activityHua Zhong		Hua Zhongsoftware28 Apr 2026734155
gsean
Gene Set Enrichment Analysis with NetworksDongmin Jung		Dongmin Jungsoftware28 Apr 2026719106
globalSeq
Global Test for CountsArmin Rauschenberger		Armin Rauschenbergersoftware28 Apr 20267050
GSALightning
Fast Permutation-based Gene Set AnalysisBilly Heung Wing Chang		Billy Heung Wing Changsoftware28 Apr 20267049
GeoTcgaData
Processing Various Types of Data on GEO and TCGAErqiang Hu		Erqiang Husoftware28 Apr 202669356