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Topic: AffymetrixChip or DimensionReduction or Network

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56 packages on Bioconductor tagged AffymetrixChip or DimensionReduction or Network, most distinct IPs first

AffymetrixChip, DimensionReduction and Network in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation dataAttila Gabor		Attila Gaborsoftware28 Apr 20261,04462
CTDquerier
Package for CTDbase data query, visualization and downstream analysisXavier Escribà-Montagut		Xavier Escribà-Montagutsoftware28 Apr 202698163
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202695994
CEMiTool
Co-expression Modules identification ToolHelder Nakaya		Helder Nakayasoftware20 Oct 2026950198
CeTF
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysisCarlos Alberto Oliveira de Biagi Junior		Carlos Alberto Oliveira de Biagi Juniorsoftware28 Apr 2026895228
CellTrails
Reconstruction, visualization and analysis of branching trajectoriesDaniel Ellwanger		Daniel Ellwangersoftware28 Apr 202686869
cellity
Quality Control for Single-Cell RNA-seq DataTomislav Ilicic		Tomislav Ilicicsoftware28 Apr 202686168
CNORfuzzy
Addon to CellNOptR: Fuzzy LogicT. Cokelaer		T. Cokelaersoftware28 Apr 202685964
CARNIVAL
A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programmingAttila Gabor		Attila Gaborsoftware28 Apr 202675363
corral
Correspondence Analysis for Single Cell DataLauren Hsu		Lauren Hsusoftware28 Apr 202672770
CausalR
Causal network analysis methodsGlyn Bradley		Glyn Bradleysoftware28 Apr 202672217
cogeqc
Systematic quality checks on comparative genomics analysesFabrício Almeida-Silva		Fabrício Almeida-Silvasoftware28 Apr 202672195
COSNet
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelingsMarco Frasca		Marco Frascasoftware28 Apr 20267150
combi
Compositional omics model based visual integrationStijn Hawinkel		Stijn Hawinkelsoftware28 Apr 202670888
CelliD
Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence AnalysisAkira Cortal		Akira Cortalsoftware3 Nov 2025690190
cliqueMS
Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics DataOriol Senan Campos		Oriol Senan Campossoftware28 Apr 2026689147
cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space)Aurélien Dugourd		Aurélien Dugourdsoftware28 Apr 2026684105
cageminer
Candidate Gene MinerFabrício Almeida-Silva		Fabrício Almeida-Silvasoftware28 Apr 2026682191
CBNplot
plot bayesian network inferred from gene expression data based on enrichment analysis resultsNoriaki Sato		Noriaki Satosoftware28 Apr 2026650166
ccImpute
ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)Marcin Malec		Marcin Malecsoftware28 Apr 202662240
chevreulShiny
Tools for managing SingleCellExperiment objects as projectsKevin Stachelek		Kevin Stacheleksoftware28 Apr 2026593266
ceRNAnetsim
Regulation Simulator of Interaction between miRNA and Competing RNAs (ceRNA)Selcen Ari Yuka		Selcen Ari Yukasoftware28 Apr 202658765
CytoMDS
Low Dimensions projection of cytometry samplesPhilippe Hauchamps		Philippe Hauchampssoftware28 Apr 2026586192
CCPlotR
Plots For Visualising Cell-Cell InteractionsSarah Ennis		Sarah Ennissoftware28 Apr 202657197
chevreulProcess
Tools for managing SingleCellExperiment objects as projectsKevin Stachelek		Kevin Stacheleksoftware28 Apr 2026552187
ClustAll
ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseasesAsier Ortega-Legarreta		Asier Ortega-Legarretasoftware28 Apr 2026540193
csdR
Differential gene co-expressionJakob Peder Pettersen		Jakob Peder Pettersensoftware28 Apr 202652279
crumblr
Count ratio uncertainty modeling base linear regressionGabriel Hoffman		Gabriel Hoffmansoftware21 Jul 2026493158
Coralysis
Coralysis sensitive identification of imbalanced cell types and states in single-cell data via multi-level integrationAntónio Sousa		António Sousasoftware28 Apr 2026467132
chevreulPlot
Plots used in the chevreulPlot packageKevin Stachelek		Kevin Stacheleksoftware28 Apr 2026406229