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CNORfuzzy

Bioc current

Addon to CellNOptR: Fuzzy Logic

v1.54.0 · software · GPL-2

Release Lineage

Entered 2.11 · Oct 3, 2012

Current · Requires R 4.6

1.0 In 28 of 49 releases 3.23

Description

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Test coverage

Line coverage

Expression

Tests / Examples

Functions

30 12 exported

Complexity

8.9 avg / 32 max

Call network

30 nodes / 30 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

5,295

Files

56

Compiled share

10%

Has compiled src

Yes

Language breakdown

R 2,932 (55.4%)C/C++/src 530 (10%)Tests 2 (0%)Docs 796 (15%)Vignettes 1,035 (19.5%)

API

Exported functions

12

Internal functions

18

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

100%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.15.0

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

28

First release

2012-10-01

Latest release

2026-04-28

Avg cadence

183 days

Cold removal rate

Dep drift

0

LOC over versions

v2.11: 3,049 LOCv2.12: 4,260 LOCv2.13: 4,260 LOCv2.14: 5,294 LOCv3.0: 5,294 LOCv3.1: 5,294 LOCv3.2: 5,294 LOCv3.3: 5,294 LOCv3.4: 5,294 LOCv3.5: 5,294 LOCv3.6: 5,294 LOCv3.7: 5,294 LOCv3.8: 5,295 LOCv3.9: 5,295 LOCv3.10: 5,295 LOCv3.11: 5,295 LOCv3.12: 5,295 LOCv3.13: 5,295 LOCv3.14: 5,295 LOCv3.15: 5,295 LOCv3.16: 5,295 LOCv3.17: 5,295 LOCv3.18: 5,295 LOCv3.19: 5,295 LOCv3.20: 5,295 LOCv3.21: 5,295 LOCv3.22: 5,295 LOCv3.23: 5,295 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
98%
Return-value docs
92%
References docs
15%

Topics

People

T. Cokelaer

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CNORfuzzy")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CNORfuzzy version 1.54.0 [Data set]. HJJB, LLC. Data release v2026-08-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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