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Topic: AffymetrixChip or DimensionReduction or Microarray

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83 packages on Bioconductor tagged AffymetrixChip or DimensionReduction or Microarray, most distinct IPs first

AffymetrixChip, DimensionReduction and Microarray in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPICYuan Tian		Yuan Tiansoftware28 Apr 20261,643266
crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arraysBenilton S Carvalho		Benilton S Carvalhosoftware28 Apr 20261,50465
codelink
Manipulation of Codelink microarray dataDiego Diez		Diego Diezsoftware28 Apr 20261,29647
CGHbase
CGHbase: Base functions and classes for arrayCGH data analysis.Mark van de Wiel		Mark van de Wielsoftware28 Apr 20261,29111
CGHcall
Calling aberrations for array CGH tumor profiles.Mark van de Wiel		Mark van de Wielsoftware28 Apr 20261,23016
CAFE
Chromosmal Aberrations Finder in Expression dataSander Bollen		Sander Bollensoftware28 Apr 20261,228141
cytomapper
Visualization of highly multiplexed imaging data in RLasse Meyer		Lasse Meyersoftware28 Apr 20261,183139
cancerclass
Development and validation of diagnostic tests from high-dimensional molecular dataDaniel Kosztyla		Daniel Kosztylasoftware28 Apr 20261,1138
cogena
co-expressed gene-set enrichment analysisZhilong Jia		Zhilong Jiasoftware28 Apr 20261,090144
cn.farms
cn.FARMS - factor analysis for copy number estimationAndreas Mitterecker		Andreas Mittereckersoftware28 Apr 20261,08955
convert
Convert Microarray Data ObjectsYee Hwa (Jean) Yang		Yee Hwa (Jean) Yangsoftware28 Apr 202698111
ctc
Cluster and Tree Conversion.Antoine Lucas		Antoine Lucassoftware28 Apr 20269791
COCOA
Coordinate Covariation AnalysisJohn Lawson		John Lawsonsoftware28 Apr 2026965126
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202695994
CEMiTool
Co-expression Modules identification ToolHelder Nakaya		Helder Nakayasoftware20 Oct 2026950198
clustifyr
Classifier for Single-cell RNA-seq Using Cell ClustersRui Fu		Rui Fusoftware28 Apr 202694889
cghMCR
Find chromosome regions showing common gains/lossesJ. Zhang		J. Zhangsoftware28 Apr 202694857
conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arraysVolker Hovestadt		Volker Hovestadtsoftware28 Apr 2026934149
clippda
A package for the clinical proteomic profiling data analysisStephen Nyangoma		Stephen Nyangomasoftware28 Apr 202693242
consensusOV
Gene expression-based subtype classification for high-grade serous ovarian cancerBenjamin Haibe-Kains		Benjamin Haibe-Kainssoftware28 Apr 2026930155
CGHnormaliter
Normalization of array CGH data with imbalanced aberrations.Bart P.P. van Houte		Bart P.P. van Houtesoftware28 Apr 202691317
CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.J. Zhang		J. Zhangsoftware28 Apr 202691053
chopsticks
The 'snp.matrix' and 'X.snp.matrix' ClassesHin-Tak Leung		Hin-Tak Leungsoftware28 Apr 202689610
CeTF
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysisCarlos Alberto Oliveira de Biagi Junior		Carlos Alberto Oliveira de Biagi Juniorsoftware28 Apr 2026895228
ChIPanalyser
ChIPanalyser: Predicting Transcription Factor Binding SitesPatrick C.N. Martin		Patrick C.N. Martinsoftware28 Apr 202687268
copa
Functions to perform cancer outlier profile analysis.James W. MacDonald		James W. MacDonaldsoftware28 Apr 20268717
CGHregions
Dimension Reduction for Array CGH Data with Minimal Information Loss.Sjoerd Vosse		Sjoerd Vossesoftware28 Apr 202686812
CellTrails
Reconstruction, visualization and analysis of branching trajectoriesDaniel Ellwanger		Daniel Ellwangersoftware28 Apr 202686869
cellity
Quality Control for Single-Cell RNA-seq DataTomislav Ilicic		Tomislav Ilicicsoftware28 Apr 202686168
cycle
Significance of periodic expression pattern in time-series dataMatthias Futschik		Matthias Futschiksoftware28 Apr 202686017