chopsticks
Bioc currentThe 'snp.matrix' and 'X.snp.matrix' Classes
Release Lineage
Entered 2.8 · Apr 14, 2011
Current · Requires R 4.6
Description
Implements classes and methods for large-scale SNP association studies
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
243 32 exported
Complexity
6 avg / 37 max
Call network
243 nodes / 249 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
25,259
Files
133
Compiled share
81.1%
Has compiled src
Yes
Language breakdown
API
Exported functions
32
Internal functions
11
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
31
First release
2011-04-13
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
100%
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 93%
- Documented parameters
- 96%
- Return-value docs
- 96%
- References docs
- 68%
Topics
People
Hin-Tak Leung