cghMCR
Bioc currentFind chromosome regions showing common gains/losses
Release Lineage
Entered 1.8 · Apr 27, 2006
Current · Requires R 4.6
Description
This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
38 4 exported
Complexity
2.7 avg / 7 max
Call network
38 nodes / 25 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
11,886
Files
21
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
5
Internal functions
33
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
LGPL
License flags
not SPDX, not OSI
History
Versions
41
First release
2006-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
8
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 86%
- Return-value docs
- 60%
- References docs
- 50%
Topics
People
J. Zhang
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("cghMCR")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.