Packages
94 packages on Bioconductor, most distinct IPs first
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| clusterProfiler A Universal Enrichment Tool for Interpreting Omics DataGuangchuang Yu | Guangchuang Yu | software | 19 Oct 2026 | 29,661 | 138 |
| ConsensusClusterPlus ConsensusClusterPlusMatt Wilkerson | Matt Wilkerson | software | 28 Apr 2026 | 3,965 | 10 |
| Category Category AnalysisBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,355 | 57 |
| ChIPpeakAnno Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval dataJianhong Ou | Jianhong Ou | software | 10 Aug 2026 | 1,898 | 125 |
| ChemmineR Cheminformatics Toolkit for RThomas Girke | Thomas Girke | software | 28 Apr 2026 | 1,854 | 65 |
| chipseq chipseq: A package for analyzing chipseq dataBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 1,626 | 54 |
| CAMERA Collection of annotation related methods for mass spectrometry dataSteffen Neumann | Steffen Neumann | software | 28 Apr 2026 | 1,548 | 157 |
| crlmm Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arraysBenilton S Carvalho | Benilton S Carvalho | software | 28 Apr 2026 | 1,504 | 65 |
| codelink Manipulation of Codelink microarray dataDiego Diez | Diego Diez | software | 28 Apr 2026 | 1,296 | 47 |
| CGHbase CGHbase: Base functions and classes for arrayCGH data analysis.Mark van de Wiel | Mark van de Wiel | software | 28 Apr 2026 | 1,291 | 11 |
| cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil | Gundula Povysil | software | 28 Apr 2026 | 1,256 | 30 |
| CGHcall Calling aberrations for array CGH tumor profiles.Mark van de Wiel | Mark van de Wiel | software | 28 Apr 2026 | 1,230 | 16 |
| CRImage CRImage a package to classify cells and calculate tumour cellularityHenrik Failmezger | Henrik Failmezger | software | 28 Apr 2026 | 1,202 | 62 |
| categoryCompare Meta-analysis of high-throughput experiments using feature annotationsRobert M. Flight | Robert M. Flight | software | 28 Apr 2026 | 1,124 | 88 |
| cancerclass Development and validation of diagnostic tests from high-dimensional molecular dataDaniel Kosztyla | Daniel Kosztyla | software | 28 Apr 2026 | 1,113 | 8 |
| cn.farms cn.FARMS - factor analysis for copy number estimationAndreas Mitterecker | Andreas Mitterecker | software | 28 Apr 2026 | 1,089 | 55 |
| cqn Conditional quantile normalizationKasper Daniel Hansen | Kasper Daniel Hansen | software | 28 Apr 2026 | 1,087 | 16 |
| ChIPseqR Identifying Protein Binding Sites in High-Throughput Sequencing DataPeter Humburg | Peter Humburg | software | 28 Apr 2026 | 1,062 | 62 |
| CellNOptR Training of boolean logic models of signalling networks using prior knowledge networks and perturbation dataAttila Gabor | Attila Gabor | software | 28 Apr 2026 | 1,044 | 62 |
| CMA Synthesis of microarray-based classificationRoman Hornung | Roman Hornung | software | 28 Apr 2026 | 1,039 | 7 |
| ChIPsim Simulation of ChIP-seq experimentsPeter Humburg | Peter Humburg | software | 28 Apr 2026 | 986 | 54 |
| convert Convert Microarray Data ObjectsYee Hwa (Jean) Yang | Yee Hwa (Jean) Yang | software | 28 Apr 2026 | 981 | 11 |
| ctc Cluster and Tree Conversion.Antoine Lucas | Antoine Lucas | software | 28 Apr 2026 | 979 | 1 |
| ChromHeatMap Heat map plotting by genome coordinateTim F. Rayner | Tim F. Rayner | software | 28 Apr 2026 | 972 | 76 |
| CoGAPS Coordinated Gene Activity in Pattern SetsElana J. Fertig | Elana J. Fertig | software | 28 Apr 2026 | 959 | 94 |
| cghMCR Find chromosome regions showing common gains/lossesJ. Zhang | J. Zhang | software | 28 Apr 2026 | 948 | 57 |
| clippda A package for the clinical proteomic profiling data analysisStephen Nyangoma | Stephen Nyangoma | software | 28 Apr 2026 | 932 | 42 |
| CGHnormaliter Normalization of array CGH data with imbalanced aberrations.Bart P.P. van Houte | Bart P.P. van Houte | software | 28 Apr 2026 | 913 | 17 |
| CNTools Convert segment data into a region by sample matrix to allow for other high level computational analyses.J. Zhang | J. Zhang | software | 28 Apr 2026 | 910 | 53 |
| CSAR Statistical tools for the analysis of ChIP-seq dataJose M Muino | Jose M Muino | software | 28 Apr 2026 | 906 | 11 |