R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: MassSpectrometry or Proteomics or Sequencing

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter: B

First letter

Release

In the current release or not

Bioconductor release

Clear all

60 packages on Bioconductor tagged MassSpectrometry or Proteomics or Sequencing, most distinct IPs first

MassSpectrometry, Proteomics and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Biostrings
Efficient manipulation of biological stringsHervé Pagès		Hervé Pagèssoftware2 Sep 202658,96214
biomformat
An interface package for the BIOM file formatPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20267,8379
batchelor
Single-Cell Batch Correction MethodsAaron Lun		Aaron Lunsoftware28 Apr 20265,72056
bamsignals
Extract read count signals from bam filesJohannes Helmuth		Johannes Helmuthsoftware21 May 20262,20214
ballgown
Flexible, isoform-level differential expression analysisJack Fu		Jack Fusoftware4 Nov 20251,84487
baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,36420
BASiCS
Bayesian Analysis of Single-Cell Sequencing dataCatalina Vallejos		Catalina Vallejossoftware29 Apr 20261,206129
BEAT
BEAT - BS-Seq Epimutation Analysis ToolkitKemal Akman		Kemal Akmansoftware28 Apr 20261,06970
bambu
Context-Aware Transcript Quantification from Long Read RNA-Seq dataYing Chen		Ying Chensoftware28 Apr 20261,06793
BiSeq
Processing and analyzing bisulfite sequencing dataKatja Hebestreit		Katja Hebestreitsoftware28 Apr 20261,05189
BRAIN
Baffling Recursive Algorithm for Isotope distributioN calculationsPiotr Dittwald		Piotr Dittwaldsoftware28 Apr 20261,01419
biscuiteer
Convenience Functions for BiscuitJacob Morrison		Jacob Morrisonsoftware28 Apr 2026990177
bnbc
Bandwise normalization and batch correction of Hi-C dataKipper Fletez-Brant		Kipper Fletez-Brantsoftware28 Apr 2026978107
BgeeCall
Automatic RNA-Seq present/absent gene expression calls generationJulien Wollbrett		Julien Wollbrettsoftware7 Jul 2026961126
BBCAnalyzer
BBCAnalyzer: an R/Bioconductor package for visualizing base countsSarah Sandmann		Sarah Sandmannsoftware28 Apr 202695477
bacon
Controlling bias and inflation in association studies using the empirical null distributionMaarten van Iterson		Maarten van Itersonsoftware28 Apr 202694033
BUSpaRse
kallisto | bustools R utilitiesLambda Moses		Lambda Mosessoftware28 Apr 2026916121
biomvRCNS
Copy Number study and Segmentation for multivariate biological dataYang Du		Yang Dusoftware28 Apr 2026914152
Basic4Cseq
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq dataCarolin Walter		Carolin Waltersoftware29 Apr 202689661
biobroom
Turn Bioconductor objects into tidy data framesJohn D. Storey		John D. Storeysoftware30 Oct 202589030
BioTIP
BioTIP: An R package for characterization of Biological Tipping-PointFelix Yu		Felix Yusoftware28 Apr 202688273
biosigner
Signature discovery from omics dataEtienne A. Thevenot		Etienne A. Thevenotsoftware28 Apr 2026867102
benchdamic
Benchmark of differential abundance methods on microbiome dataMatteo Calgaro		Matteo Calgarosoftware28 Apr 2026866378
bioassayR
Cross-target analysis of small molecule bioactivityThomas Girke		Thomas Girkesoftware28 Apr 202684474
blacksheepr
Outlier Analysis for pairwise differential comparisonRugglesLab		RugglesLabsoftware28 Apr 2026827124
BgeeDB
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontologyJulien Wollbrett		Julien Wollbrettsoftware29 Apr 202682096
BatchQC
Batch Effects Quality Control SoftwareYaoan Leng		Yaoan Lengsoftware15 Sep 2026818245
BadRegionFinder
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverageSarah Sandmann		Sarah Sandmannsoftware12 May 202681697
BaseSpaceR
R SDK for BaseSpace RESTful APIJared O'Connell		Jared O'Connellsoftware29 Apr 20268114
BindingSiteFinder
Binding site defintion based on iCLIP dataMirko Brüggemann		Mirko Brüggemannsoftware28 Apr 2026799140