biscuiteer
Bioc currentConvenience Functions for Biscuit
Release Lineage
Entered 3.10 · Oct 30, 2019
Current · Requires R 4.6
Description
A test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
47 27 exported
Complexity
4 avg / 29 max
Call network
47 nodes / 30 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,944
Files
115
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
27
Internal functions
20
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
Yes
CI type
["appveyor"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
14
First release
2019-10-29
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Jacob Morrison author maintainer
- James Eapen author
- Lyong Heo author
- Benjamin Johnson author
- Tim Triche author
- Wanding Zhou author