gaston
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Description
Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.
Downloads
6.9K
Last 30 days
1389th
20.7K
Last 90 days
114.5K
Last year
Trend: -10.9% (30d vs prior 30d)
28
Last 30 days
152
Last 90 days
613
Last year
Trend: -45.1% (30d vs prior 30d)
290
Last 30 days
804
Last 90 days
4.8K
Last year
Trend: -5.8% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 96.4Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 92.8Mb
installed package size
installed size is 84.3Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 80.7Mb
installed package size
installed size is 6.5Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 2.9Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/gaston.Rcheck/00install.out' for details.
installed package size
installed size is 96.4Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 92.8Mb
installed package size
installed size is 84.3Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 80.7Mb
installed package size
installed size is 6.5Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 2.9Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 96.4Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 92.8Mb
installed package size
installed size is 84.3Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 80.7Mb
installed package size
installed size is 6.5Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 2.9Mb
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
328 48 exported
Complexity
8.1 avg / 35 max
Call network
328 nodes / 319 edges
Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
13,482
Files
195
Compiled share
54.8%
Has compiled src
Yes
Language breakdown
API
Exported functions
48
Internal functions
22
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
88.9%
\dontrun example ratio
2.9%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2015-10-02
Latest release
2023-12-07
Avg cadence
101 days
Cold removal rate
100%
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.