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Ravages

Rare Variant Analysis and Genetic Simulations

v1.2.0 · Feb 27, 2026 · GPL-3
CRAN GitHub Mirror

Description

Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome using the RAVA-FIRST approach (Bocher et al. 2022 <doi:10.1371/journal.pgen.1009923>). Ravages also enables to perform genetic simulations (Bocher et al. 2023 <doi:10.1002/gepi.22529>).

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CRAN Check Status

3 NOTE
11 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is 21.7Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
    libs  16.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 21.9Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
    libs  16.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    libs   1.5Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 21.7Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
    libs  16.0Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 21.9Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
    libs  16.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  6.4Mb
  sub-directories of 1Mb or more:
    data   3.6Mb
    libs   1.5Mb

Dependency Network

Dependencies Reverse dependencies Rcpp RcppParallel gaston mlogit (>= 1.1-0) Formula dfidx bedr curl data.table Ravages

Version History

new 1.2.0 Mar 10, 2026
updated 1.2.0 ← 1.1.3 diff Feb 26, 2026
updated 1.1.3 ← 1.1.2 diff Mar 27, 2023
updated 1.1.2 ← 1.1.1 diff Jan 31, 2023
updated 1.1.1 ← 1.1.0 diff Nov 10, 2022
updated 1.1.0 ← 1.0.0 diff May 31, 2022
updated 1.0.0 ← 0.1.5 diff Oct 18, 2021
updated 0.1.5 ← 0.1.4 diff May 12, 2021
updated 0.1.4 ← 0.1.3 diff May 7, 2021
updated 0.1.3 ← 0.1.2 diff Apr 7, 2021
updated 0.1.2 ← 0.1.1 diff Mar 15, 2021
updated 0.1.1 ← 0.1 diff Nov 22, 2020
new 0.1 Nov 10, 2020