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bigsnpr

Analysis of Massive SNP Arrays

v1.12.21 · Aug 21, 2025 · GPL-3

Description

Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.

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CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 4, 2026
ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 30, 2026
NOTE r-release-macos-x86_64

compiled code

File ‘bigsnpr/libs/bigsnpr.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
ERROR r-release-windows-x86_64

tests

Running 'spelling.R' [0s]
  Running 'testthat.R' [176s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(bigsnpr)
  Loading required package: bigstatsr
  > 
  > for (k in 1:9)
  +   test_check("bigsnp
...[truncated]...
 4.       └─parallel::makeCluster(ncores, ...)
   5.         └─parallel::makePSOCKcluster(names = spec, ...)
   6.           └─base::serverSocket(port = port)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 135 ]
  Error:
  ! Test failures.
  Execution halted
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.3Mb
  sub-directories of 1Mb or more:
    libs   7.8Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/bigsnpr.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.3Mb
  sub-directories of 1Mb or more:
    libs   7.8Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  9.9Mb
  sub-directories of 1Mb or more:
    libs   8.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  9.3Mb
  sub-directories of 1Mb or more:
    libs   7.8Mb

Reverse Dependencies (5)

suggests

Dependency Network

Dependencies Reverse dependencies bigstatsr bigassertr bigparallelr bigsparser bigreadr bigutilsr data.table doRNG foreach ggplot2 magrittr Matrix Rcpp runonce vctrs RapidoPGS dartR.base locStra tidypopgen plmmr bigsnpr

Version History

19 tracked
new 1.12.21 Mar 10, 2026
updated 1.12.21 ← 1.12.18 diff Aug 20, 2025
updated 1.12.18 ← 1.12.15 diff Nov 25, 2024
updated 1.12.15 ← 1.12.2 diff Sep 19, 2024
updated 1.12.2 ← 1.11.6 diff Mar 27, 2023
updated 1.11.6 ← 1.11.4 diff Nov 6, 2022
updated 1.11.4 ← 1.10.8 diff Oct 20, 2022
updated 1.10.8 ← 1.9.11 diff Jul 8, 2022
updated 1.9.11 ← 1.9.10 diff Feb 15, 2022
updated 1.9.10 ← 1.8.1 diff Feb 12, 2022
updated 1.8.1 ← 1.6.1 diff Jun 2, 2021
updated 1.6.1 ← 1.5.2 diff Jan 10, 2021
updated 1.5.2 ← 1.4.4 diff Oct 31, 2020
updated 1.4.4 ← 1.3.0 diff Jul 4, 2020
updated 1.3.0 ← 1.2.2 diff Mar 8, 2020