R Observatory: Metrics for rNeighborGWAS version 1.2.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

rNeighborGWAS

1.2.5

Testing Neighbor Effects in Marker-Based Regressions

0packages depend

6.3Kdownloads / year

88.8%test coverage

13/13checks pass

Overview

About

Maintained by Yasuhiro SatoFirst published 2020-04-157 releasesCRAN page ↗

To incorporate neighbor genotypic identity into genome-wide association studies, the package provides a set of functions for variation partitioning and association mapping. The theoretical background of the method is described in Sato et al. (2021) doi:10.1038/s41437-020-00401-w.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)

install.packages("rNeighborGWAS", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rneighborgwas

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-rNeighborGWAS

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

13OK

Slowest check: 4.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.31

88.8%

Coverage · measured lines

100%

Documentation · exports

5

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 92%
Return-value docs: 100%
References docs: 42%

Downloads

6.3K

CRAN downloads in the past year

Rank #7,854 · ~17/day · ~528/mo

Releases R versions

Daily download trend is not available in this view yet.

18630 days

1.1K90 days

6.3K1 year

Compare downloads with other packages →

Also on102 r2u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (5)

gastonMatrixRcppParallelstatsgraphics

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Yasuhiro Sato

Author, Maintainer

Authors (4)

Author, Maintainer

Author

Author

Author

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2.5Latest
2025-04-23 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.2.4
2021-05-10 · diff ↗
1.2.3
2021-04-07 · diff ↗
1.2.2
2020-11-23 · diff ↗
1.2.1
2020-07-22 · diff ↗
unarchivedReturned to CRAN
2020-07-22
archivedRemoved from CRAN
2020-07-20
check problems were not corrected in time
1.2.0
2020-07-06 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.0.0
2020-04-15

Show 1 earlier events

R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-04-15
Total releases: 7 / 6 yrs
License: GPL-3 OSI
Download size: 80 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("rNeighborGWAS")

Format

Sato, Y., Nagano, A. J., Shimizu, K. K., & Yamamoto, E. (2025). rNeighborGWAS: Testing Neighbor Effects in Marker-Based Regressions (Version 1.2.5) [Computer software]. https://doi.org/10.32614/CRAN.package.rNeighborGWAS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for rNeighborGWAS version 1.2.5 [Data set]. HJJB, LLC. Data release v2026-08-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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