This package was removed from CRAN on 2025-12-04. Its history is shown below.

Reason: requires archived package 'TESS'

Details below reflect version 2.5, its last release before removal.

RPANDA

2.5

Phylogenetic ANalyses of DiversificAtion

2packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Hélène Morlon16 releasesCRAN page ↗GitHub ↗

Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) DOI:10.1371/journal.pbio.1000493, Morlon et al. (2011) DOI:10.1073/pnas.1102543108, Condamine et al. (2013) DOI:10.1111/ele.12062, Morlon et al. (2014) DOI:10.1111/ele.12251, Manceau et al. (2015) DOI:10.1111/ele.12415, Lewitus & Morlon (2016) DOI:10.1093/sysbio/syv116, Drury et al. (2016) DOI:10.1093/sysbio/syw020, Manceau et al. (2016) DOI:10.1093/sysbio/syw115, Morlon et al. (2016) DOI:10.1111/2041-210X.12526, Clavel & Morlon (2017) DOI:10.1073/pnas.1606868114, Drury et al. (2017) DOI:10.1093/sysbio/syx079, Lewitus & Morlon (2017) DOI:10.1093/sysbio/syx095, Drury et al. (2018) DOI:10.1371/journal.pbio.2003563, Clavel et al. (2019) DOI:10.1093/sysbio/syy045, Maliet et al. (2019) DOI:10.1038/s41559-019-0908-0, Billaud et al. (2019) DOI:10.1093/sysbio/syz057, Lewitus et al. (2019) DOI:10.1093/sysbio/syz061, Aristide & Morlon (2019) DOI:10.1111/ele.13385, Maliet et al. (2020) DOI:10.1111/ele.13592, Drury et al. (2021) DOI:10.1371/journal.pbio.3001270, Perez-Lamarque & Morlon (2022) DOI:10.1111/mec.16478, Perez-Lamarque et al. (2022) DOI:10.1101/2021.08.30.458192, Mazet et al. (2023) DOI:10.1111/2041-210X.14195, Drury et al. (2024) DOI:10.1016/j.cub.2023.12.055.

Install

R (source archive)pak (dev)Ubuntu (r2u)

url <- "https://cran.r-project.org/src/contrib/Archive/RPANDA/RPANDA_2.5.tar.gz"
pkgFile <- "RPANDA_2.5.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.5) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("hmorlon/PANDA")

Development version from hmorlon/PANDA. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rpanda

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

CRAN check results are not tracked yet.

Documentation

Documentation signals are not tracked yet for this package.

Downloads

RPANDA Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on505 r2u83 c2d4u

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Depends (4)

R >= 3.5.0ape picantemethods

Imports (31)

BB bipartiteclustercoda deSolve fields fpc geiger glassoFastgraphicsgrDevicesigraphMatrixmvtnorm mvMORPH GUniFracparallelParallelLogger phangorn phytools pracma pspline pvclust raster RColorBrewer R.utils RmpfrstatsTESSutilsvegan

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

–indirect (not tracked)

AntibodyForests nodeSub

Code & Tests

Datasets

People & History

People (11)

Maintainer (1)

Hélène Morlon

Author, Maintainer, Copyright holder

Authors (11)

Hélène Morlon

Author, Maintainer, Copyright holder

Eric Lewitus

Author, Copyright holder · added in 1.3

Fabien Condamine

Author, Copyright holder · added in 1.3

Marc Manceau

Author, Copyright holder · added in 1.3

Julien Clavel

Author, Copyright holder · added in 1.3

Jonathan Drury

Author, Copyright holder · added in 1.3

Olivier Billaud

Author, Copyright holder · added in 1.5

Odile Maliet

Author, Copyright holder · added in 1.6

Leandro Aristide

Author, Copyright holder · added in 1.8

Benoit Perez-Lamarque

Author, Copyright holder · added in 2.2

Nathan Mazet

Author, Copyright holder · added in 2.3

Hélène Morlon

Author, Maintainer, Copyright holder

Eric Lewitus

Author, Copyright holder · added in 1.3

Fabien Condamine

Author, Copyright holder · added in 1.3

Marc Manceau

Author, Copyright holder · added in 1.3

Julien Clavel

Author, Copyright holder · added in 1.3

Jonathan Drury

Author, Copyright holder · added in 1.3

Olivier Billaud

Author, Copyright holder · added in 1.5

Odile Maliet

Author, Copyright holder · added in 1.6

Show 3 more copyright holders

Leandro Aristide

Author, Copyright holder · added in 1.8

Benoit Perez-Lamarque

Author, Copyright holder · added in 2.2

Nathan Mazet

Author, Copyright holder · added in 2.3

Package Timeline

16 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-04
requires archived package 'TESS'
2.5
2025-09-24 · diff ↗
R
R 4.5.0 released · 2025-04-11
unarchivedReturned to CRAN
2025-01-15
2.4
2025-01-14 · diff ↗
archivedRemoved from CRAN
2024-11-24
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
2.3
2024-02-21 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.2
2022-10-24 · diff ↗
2.1
2022-07-18 · diff ↗
unarchivedReturned to CRAN
2022-07-18
archivedRemoved from CRAN
2022-05-23
check problems were not corrected in time
R
R 4.2.0 released · 2022-04-22
2.0
2021-11-10 · diff ↗

Show 19 earlier events

R
R 4.1.0 released · 2021-05-18
1.9
2020-09-15 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.8
2020-03-06 · diff ↗
1.7
2020-01-09 · diff ↗
1.6
2019-06-11 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.5
2019-01-30 · diff ↗
1.4
2018-08-04 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.3
2017-04-11 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.2
2016-03-31 · diff ↗
1.1
2015-09-15 · diff ↗
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
1.0
2014-02-04
R
R 3.0.0 released · 2013-04-03

Package metadata

Total releases: 16
License: GPL-2 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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