Q2 2014 in CRAN

Part of 2014.

Final

180

New packages

794

Updated

Archived

14M

Downloads

New packages (60+)

PBD Protracted Birth-Death Model of Diversification	2014-04-01
domino R Console Bindings for the 'Domino Command-Line Client'	2014-04-01
spcr Sparse Principal Component Regression	2014-04-01
Rchoice Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters	2014-04-02
birdring Methods to Analyse Ring Re-Encounter Data	2014-04-02
fat2Lpoly Two-Locus Family-Based Association Test with Polytomous Outcome	2014-04-02
ssym Fitting Semi-Parametric log-Symmetric Regression Models	2014-04-02
ConnMatTools Tools for Working with Connectivity Data	2014-04-03
LSAfun Applied Latent Semantic Analysis (LSA) Functions	2014-04-03
RankResponse Ranking Responses in a Single Response Question or a Multiple Response Question	2014-04-03
findpython Functions to Find an Acceptable Python Binary	2014-04-03
survivalMPL Penalised Maximum Likelihood for Survival Analysis Models	2014-04-03
ERP Significance Analysis of Event-Related Potentials Data	2014-04-04
aRpsDCA Arps Decline Curve Analysis in R	2014-04-04
bigsplines Smoothing Splines for Large Samples	2014-04-04
neuroim Data Structures and Handling for Neuroimaging Data	2014-04-04
palinsol Insolation for Palaeoclimate Studies	2014-04-04
isotonic.pen Penalized Isotonic Regression in one and two dimensions	2014-04-05
acss.data Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)	2014-04-05
acss Algorithmic Complexity for Short Strings	2014-04-06
Rsomoclu Somoclu	2014-04-07
sotkanet Sotkanet Open Data Access and Analysis	2014-04-07
Ecfun Functions for 'Ecdat'	2014-04-08
sitar Super Imposition by Translation and Rotation Growth Curve Analysis	2014-04-08
orca Computation of Graphlet Orbit Counts in Sparse Graphs	2014-04-10
EntropyEstimation Estimation of Entropy and Related Quantities	2014-04-13
anominate Alpha-NOMINATE Ideal Point Estimator	2014-04-13
helsinki R Tools for Helsinki Open Data	2014-04-13
DivE Diversity Estimator	2014-04-14
OceanView Visualisation of Oceanographic Data and Model Output	2014-04-14
binda Multi-Class Discriminant Analysis using Binary Predictors	2014-04-14
ibs Integral of B-Spline Functions	2014-04-14
mdatools Multivariate Data Analysis for Chemometrics	2014-04-14
StereoMorph Stereo Camera Calibration and Reconstruction	2014-04-15
VAR.etp VAR Modelling: Estimation, Testing, and Prediction	2014-04-15
bigalgebra 'BLAS' and 'LAPACK' Routines for Native R Matrices and 'big.matrix' Objects	2014-04-16
ShrinkCovMat Shrinkage Covariance Matrix Estimators	2014-04-17
HSAUR3 A Handbook of Statistical Analyses Using R (3rd Edition)	2014-04-18
WikipediR A MediaWiki API Wrapper	2014-04-18
RApiSerialize R API Serialization	2014-04-19
openxlsx Read, Write and Edit xlsx Files	2014-04-21
FDboost Boosting Functional Regression Models	2014-04-22
GPLTR Generalized Partially Linear Tree-Based Regression Model	2014-04-23
REdaS Companion Package to the Book 'R: Einführung durch angewandte Statistik'	2014-04-23
sglasso Lasso Method for RCON(V,E) Models	2014-04-23
falcon Finding Allele-Specific Copy Number in Next-Generation Sequencing Data	2014-04-24
qdapTools Tools for the 'qdap' Package	2014-04-24
sand Statistical Analysis of Network Data with R, 2nd Edition	2014-04-24
isingLenzMC Monte Carlo for Classical Ising Model	2014-04-25
sdmvspecies Create Virtual Species for Species Distribution Modelling	2014-04-27
ClickClust Model-Based Clustering of Categorical Sequences	2014-04-28
PHeval Evaluation of the Proportional Hazards Assumption and Test for Comparing Survival Curves with a Standardized Score Process	2014-04-28
PopED Population (and Individual) Optimal Experimental Design	2014-04-28
TcGSA Time-Course Gene Set Analysis	2014-04-28
TopKLists Inference, Aggregation and Visualization for Top-K Ranked Lists	2014-04-28
maSAE Mandallaz' Model-Assisted Small Area Estimators	2014-04-28
uniReg Unimodal Penalized Spline Regression using B-Splines	2014-04-29
PCPS Principal Coordinates of Phylogenetic Structure	2014-04-30
mime Map Filenames to MIME Types	2014-04-30
PTE Personalized Treatment Evaluator	2014-05-01

Archived / removed

Why

4 the request of the maintainer
3 maintainer address <caroline.berard@agroparistech.fr> bounced
2 : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders
2 memory access errors were not corrected
2 memory-access errors were not corrected
2 there was no response to reports about the missing 'SystemRequirements'
1 : no response nor update was received after a request to clean up license problems
1 : the end of a long saga of failing to work correctly with responses (or non-response) from a web resource

h5r : no response nor update was received after a request to clean up license problems	2014-06-28
GetNenshuJP frequently failed to work with responses from web resource	2014-06-27
cimis : the end of a long saga of failing to work correctly with responses (or non-response) from a web resource	2014-06-27
NLSdata the request of the maintainer	2014-06-25
chplot : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2014-06-24
clac : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2014-06-24
HMMmix maintainer address <caroline.berard@agroparistech.fr> bounced	2014-06-22
MultiChIPmixHMM maintainer address <caroline.berard@agroparistech.fr> bounced	2014-06-22
TAHMMAnnot maintainer address <caroline.berard@agroparistech.fr> bounced	2014-06-22
wethepeople maintainer address <yoni@opower.com> bounced	2014-06-22
sheldusr the request of the maintainer	2014-06-20
LearnEDA the request of the maintainer	2014-06-18
simPopulation was not updated when dependency 'POT' was archived	2014-06-13
CAGExploreR it depends on the archived package 'rbamtools'	2014-06-10
ANN memory-access errors were not corrected	2014-05-31
SNPRelate it depends on 'gdsfmt'	2014-05-31
SigWinR memory access errors were not corrected	2014-05-31
mugnet memory access errors were not corrected	2014-05-31
birch long-standing memory access errors leading to segfaults were ignored	2014-05-30
RTisean the request of the maintainer	2014-05-17
multicore	2014-05-17
kernelPop C++ and memory-access errors were not corrected	2014-05-16
scapeMCMC : use package 'scape' and/or 'plotMCMC' instead	2014-05-13
LumiWCluster memory-access errors were not corrected	2014-05-01
StochaTR there was no response to reports about the missing 'SystemRequirements'	2014-04-18
WMTregions there was no response to reports about the missing 'SystemRequirements'	2014-04-18

Downloads

14M

Total downloads

+33.1%

vs prior period

Notable

Major version jumps

Bchron 3.2→4.0 lpint 1.0→2.0 rankhazard 0.8-1→1.0 CARBayes 2.0→3.0 argparse 0.5.3→1.0.0 seacarb 2.4.10→3.0 BGPhazard 0.9.2→1.0 EWGoF 1.0→2.0 coxphw 2.13→3.0.0 tab 1.0→2.1.1 geomorph 1.1-6→2.0 seqminer 2.7→3.0 CollocInfer 0.1.7→1.0.0 binhf 0.9-3→1.0-1 ICEbox 0.1→1.0 catR 2.6→3.0 WikipediR 0.5→1.0.0 quantspec 0.2→1.0-0 GPFDA 1.1→2.0 bayesPop 4.3-0→5.0-0

First-time CRAN authors

Alexandre Bureau Jordie Croteau Mauricio Sarrias ×5 Stephane Heritier ×2 Serigne Lo Jun Ma ×2 Maurizio Manuguerra Michel Crucifix ×2 Derrick Turk Nicolas Gauvrit ×2 Fernando Soler Toscano ×2 Hector Zenil ×2 Shichao Gao Einari Happonen Aleksi Lahtinen Vesa Saaristo Peter Wittek Tim Cole Janez Demsar Tomaz Hocevar