May 2014 in CRAN

Part of Q2 2014 and 2014.

Final

New packages

305

Updated

Archived

Downloads

New packages (57)

PTE Personalized Treatment Evaluator	2014-05-01
bujar Buckley-James Regression for Survival Data with High-Dimensional Covariates	2014-05-01
paleobioDB Download and Process Data from the Paleobiology Database	2014-05-01
HK80 Conversion Tools for HK80 Geographical Coordinate System	2014-05-02
SpecsVerification Forecast Verification Routines for Ensemble Forecasts of Weather and Climate	2014-05-02
optR Optimization Toolbox for Solving Linear Systems	2014-05-02
secrdesign Sampling Design for Spatially Explicit Capture-Recapture	2014-05-02
stosim Stochastic Simulator for Reliability Modeling of Repairable Systems	2014-05-02
rSCA An R Package for Stepwise Cluster Analysis	2014-05-03
sglr Sequential Generalized Likelihood Ratio Decision Boundaries Proposed by Shih, Lai, Heyse and Chen (2010, <doi:10.1002/Sim.4036>)	2014-05-03
sharpshootR A Soil Survey Toolkit	2014-05-03
nplr N-Parameter Logistic Regression	2014-05-04
FLR Fuzzy Logic Rule Classifier	2014-05-06
HiClimR Hierarchical Climate Regionalization	2014-05-07
npcp Some Nonparametric CUSUM Tests for Change-Point Detection in Possibly Multivariate Observations	2014-05-07
ocedata Oceanographic Data Sets for 'oce' Package	2014-05-07
gendata Generate and Modify Synthetic Datasets	2014-05-08
iRepro Reproducibility for Interval-Censored Data	2014-05-08
slfm Fitting a Bayesian Sparse Latent Factor Model in Gene Expression Analysis	2014-05-08
RPublica ProPublica API Client	2014-05-10
federalregister Client Package for the U.S. Federal Register API	2014-05-10
qqman Q-Q and Manhattan Plots for GWAS Data	2014-05-10
cna Causal Modeling with Coincidence Analysis	2014-05-12
finiteruinprob Computation of the Probability of Ruin Within a Finite Time Horizon	2014-05-12
RcppRedis 'Rcpp' Bindings for 'Redis' using the 'hiredis' Library	2014-05-13
sensitivitymw Sensitivity Analysis for Observational Studies Using Weighted M-Statistics	2014-05-13
CAvariants Correspondence Analysis Variants	2014-05-14
imputeR A General Multivariate Imputation Framework	2014-05-14
qmethod Analysis of Subjective Perspectives Using Q Methodology	2014-05-14
DoubleExpSeq Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter	2014-05-15
mvctm Multivariate Variance Components Tests for Multilevel Data	2014-05-16
ExtDist Extending the Range of Functions for Probability Distributions	2014-05-17
qlcMatrix Utility Sparse Matrix Functions for Quantitative Language Comparison	2014-05-18
cubfits Codon Usage Bias Fits	2014-05-19
DFIT Differential Functioning of Items and Tests	2014-05-20
GLSME Generalized Least Squares with Measurement Error	2014-05-20
gramEvol Grammatical Evolution for R	2014-05-20
zCompositions Treatment of Zeros, Left-Censored and Missing Values in Compositional Data Sets	2014-05-20
memgene Spatial Pattern Detection in Genetic Distance Data Using Moran's Eigenvector Maps	2014-05-23
streamMOA Interface for MOA Stream Clustering Algorithms	2014-05-25
Rtsne T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation	2014-05-27
bootLR Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests	2014-05-27
vardpoor Variance Estimation for Sample Surveys by the Ultimate Cluster Method	2014-05-27
htmltools Tools for HTML	2014-05-28
FLSSS Mining Rigs for Problems in the Subset Sum Family	2014-05-29
hamlet Hierarchical Optimal Matching and Machine Learning Toolbox	2014-05-29
randomUniformForest Random Uniform Forests for Classification, Regression and Unsupervised Learning	2014-05-29
wskm Weighted k-Means Clustering	2014-05-29
ARPobservation Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes	2014-05-30
NormPsy Normalisation of Psychometric Tests	2014-05-30
argparser Command-Line Argument Parser	2014-05-30
ipdw Spatial Interpolation by Inverse Path Distance Weighting	2014-05-30
qcr Quality Control Review	2014-05-30
STPGA Selection of Training Populations by Genetic Algorithm	2014-05-31
pbo Probability of Backtest Overfitting	2014-05-31
pipeR Multi-Paradigm Pipeline Implementation	2014-05-31
transport Computation of Optimal Transport Plans and Wasserstein Distances	2014-05-31

Archived / removed

Why

2 memory access errors were not corrected
2 memory-access errors were not corrected
1 : use package 'scape' and/or 'plotMCMC' instead
1 C++ and memory-access errors were not corrected
1 it depends on 'gdsfmt'
1 long-standing memory access errors leading to segfaults were ignored
1 reason not recorded
1 the request of the maintainer

ANN memory-access errors were not corrected	2014-05-31
SNPRelate it depends on 'gdsfmt'	2014-05-31
SigWinR memory access errors were not corrected	2014-05-31
mugnet memory access errors were not corrected	2014-05-31
birch long-standing memory access errors leading to segfaults were ignored	2014-05-30
RTisean the request of the maintainer	2014-05-17
multicore	2014-05-17
kernelPop C++ and memory-access errors were not corrected	2014-05-16
scapeMCMC : use package 'scape' and/or 'plotMCMC' instead	2014-05-13
LumiWCluster memory-access errors were not corrected	2014-05-01

Downloads

Total downloads

-17.9%

vs prior period

Notable

Major version jumps

roxygen2 3.1.0→4.0.0 rvHPDT 2.0→3.0 fields 6.9.1→7.1 R.matlab 2.2.3→3.0.0 ggplot2 0.9.3.1→1.0.0 ORCME 1.2.1→2.0 qdapTools 0.2.0→1.0.0 EMMREML 1.0→2.0 stream 0.2-0→1.0-0 NHPoisson 2.1→3.0 PBD 0.9→1.0 openxlsx 1.0.3→2.0.1 NbClust 1.4→2.0 SensitivityCaseControl 1.0→2.1 ChemoSpec 1.61-3→2.0-2 qdap 1.3.5→2.0.0 qdapDictionaries 0.0.4→1.0.1

First-time CRAN authors

Adrián Castro Insua ×2 Luciano Fabris Sgarbi Javier González Hernández Alina Levine Sara Varela ×4 Matteo De Felice ×2 Ian Durbach Igor Kroener Jacob Ormerod ×5 David Silkworth ×5 Xiuquan (Xander) Wang Brian M. Bot Frederic Commo Tymoteusz Kwiecinski ×4 Hamada S. Badr ×11 Amin K. Dezfuli Alex Verhoijsen Benjamin F. Zaitchik Joao Duarte ×2 Vinicius Mayrink ×4