Q2 2012 in CRAN

Part of 2012.

Final

137

New packages

598

Updated

Archived

+100

Net growth

New packages (60+)

SoilR Models of Soil Organic Matter Decomposition	2012-04-01
disclap Discrete Laplace Exponential Family	2012-04-01
svHttp 'SciViews::R' - HTTP Server	2012-04-01
Distance Distance Sampling Detection Function and Abundance Estimation	2012-04-02
TUWmodel Lumped/Semi-Distributed Hydrological Model for Education Purposes	2012-04-02
svKomodo 'SciViews' - Functions to Interface with Komodo IDE	2012-04-02
tempdisagg Methods for Temporal Disaggregation and Interpolation of Time Series	2012-04-02
ETLUtils Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data	2012-04-03
SGL Fit a GLM (or Cox Model) with a Combination of Lasso and Group Lasso Regularization	2012-04-03
gammSlice Generalized Additive Mixed Model Analysis via Slice Sampling	2012-04-04
markdown Render Markdown with 'commonmark'	2012-04-05
GenOrd Simulation of Discrete Random Variables with Marginal Distributions and Correlation Matrix and via a Gaussian or Student's t Copula	2012-04-06
phenology Tools to Manage a Parametric Function that Describes Phenology and More	2012-04-06
leapp Latent Effect Adjustment After Primary Projection	2012-04-07
survSNP Power Calculations for SNP Studies with Censored Outcomes	2012-04-08
robustHD Robust Methods for High-Dimensional Data	2012-04-10
sparseLTSEigen RcppEigen back end for sparse least trimmed squares regression	2012-04-10
varbvs Large-Scale Bayesian Variable Selection Using Variational Methods	2012-04-10
FastImputation Learn from Training Data then Quickly Fill in Missing Data	2012-04-11
disclapmix Discrete Laplace Mixture Inference using the EM Algorithm	2012-04-13
faoutlier Influential Case Detection Methods for Factor Analysis and Structural Equation Models	2012-04-14
TSTutorial Fitting and Predict Time Series Interactive Laboratory	2012-04-15
mseapca Metabolite Set Enrichment Analysis for Loadings	2012-04-15
compound.Cox Univariate Feature Selection and Compound Covariate for Predicting Survival, Including Copula-Based Analyses for Dependent Censoring	2012-04-16
logitnorm Functions for the Logitnormal Distribution	2012-04-16
splm Econometric Models for Spatial Panel Data	2012-04-16
sft Functions for Systems Factorial Technology Analysis of Data	2012-04-17
LOST Missing Morphometric Data Simulation and Estimation	2012-04-18
bayesPop Probabilistic Population Projection	2012-04-19
geospt Geostatistical Analysis and Design of Optimal Spatial Sampling Networks	2012-04-19
vec2dtransf 2D Cartesian Coordinate Transformation	2012-04-19
NHPoisson Modelling and Validation of Non Homogeneous Poisson Processes	2012-04-20
pcaL1 L1-Norm PCA Methods	2012-04-20
stpp Space-Time Point Pattern Simulation, Visualisation and Analysis	2012-04-21
anoint Analysis of Interactions	2012-04-24
fracprolif Fraction Proliferation via a Quiescent Growth Model	2012-04-24
MAMS Designing Multi-Arm Multi-Stage Studies	2012-04-25
superdiag A Comprehensive Test Suite for Testing Markov Chain Nonconvergence	2012-04-25
mmand Mathematical Morphology in Any Number of Dimensions	2012-04-27
CePa Centrality-Based Pathway Enrichment	2012-04-28
GUniFrac Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis	2012-04-28
QRM Provides R-Language Code to Examine Quantitative Risk Management Concepts	2012-04-28
biwavelet Conduct Univariate and Bivariate Wavelet Analyses	2012-04-28
lqmm Linear Quantile Mixed Models	2012-04-29
gglasso Group Lasso Penalized Learning Using a Unified BMD Algorithm	2012-04-30
stellaR Evolutionary Tracks and Isochrones from Pisa Stellar Evolution Database	2012-04-30
mpoly Symbolic Computation and More with Multivariate Polynomials	2012-05-02
R.devices Unified Handling of Graphics Devices	2012-05-03
RcmdrPlugin.EBM Rcmdr Evidence Based Medicine Plug-in Package	2012-05-03
crrstep Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model	2012-05-04
BayesLogit PolyaGamma Sampling	2012-05-06
httr Tools for Working with URLs and HTTP	2012-05-06
visualFields Statistical Methods for Visual Fields	2012-05-06
AGD Analysis of Growth Data	2012-05-08
gsbDesign Group Sequential Bayes Design	2012-05-08
phia Post-Hoc Interaction Analysis	2012-05-09
marqLevAlg A Parallelized General-Purpose Optimization Based on Marquardt-Levenberg Algorithm	2012-05-10
SKAT SNP-Set (Sequence) Kernel Association Test	2012-05-11
SightabilityModel Wildlife Sightability Modeling	2012-05-12
polywog Bootstrapped Basis Regression with Oracle Model Selection	2012-05-12

Archived / removed

Why

21 reason not recorded
7 : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders
4 : it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders
1 : the maintainer has not managed to get a version according to the CRAN policies uploaded for several weeks
1 maintainer <nstephens@adknowledge.com> and co-author addresses bounced
1 maintainer address bounces, maintainer is untraceable (try to alternative address without reply), later archived for not passing checks
1 requested by the original maintainer, ivan.kojadinovic@univ-pau.fr
1 the original maintainer, 'Romain Francois <romain@r-enthusiasts.com>', is unresponsive

mapReduce	2012-06-25
SeqKnn : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
backfitRichards : it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders	2012-06-24
dyad : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
frbf : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
gbev : it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders	2012-06-24
lodplot : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
mrt : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
scaleCoef : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
sdtalt : it had check WARNINGs since R-2.14.0 (at least) and was not fixed for more than half a year even after reminders	2012-06-24
swst : it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders	2012-06-24
SRPM	2012-06-22
USPS	2012-06-19
xterm256 the original maintainer, 'Romain Francois <romain@r-enthusiasts.com>', is unresponsive	2012-06-18
ISIPTA	2012-06-13
Sim.DiffProcGUI	2012-06-12
snpXpert maintainer address bounces, maintainer is untraceable (try to alternative address without reply), later archived for not passing checks	2012-06-08
iDEMO	2012-06-06
BerkeleyEarth	2012-06-05
RghcnV3	2012-06-04
LLAhclust requested by the original maintainer, ivan.kojadinovic@univ-pau.fr	2012-06-03
Ratings	2012-06-03
cloudRmpi	2012-06-02
hacks maintainer <nstephens@adknowledge.com> and co-author addresses bounced	2012-06-01
nutshellDE : the maintainer has not managed to get a version according to the CRAN policies uploaded for several weeks	2012-06-01
papply : it had check ERRORs since R-2.15.0 (at least) and was not fixed for weeks even after reminders	2012-06-01
OIdata	2012-05-31
simSummary	2012-05-17
cumplyr	2012-05-14
SortableHTMLTables	2012-05-13
sculpt3d	2012-04-30
cloudRmpiJars	2012-04-24
rreval	2012-04-24
labeledLoop	2012-04-21
digeR	2012-04-12
iGenomicViewer	2012-04-06
pgfSweave	2012-04-02

Notable

Major version jumps

x12 0.2-0→1.0-0 depend.truncation 1.0→2.0 QCA 0.6-5→1.0-0 negenes 0.99-2→1.0-1 adaptivetau 0.902→1.0 sem 2.1-1→3.0-0 ggmap 1.3→2.0 multitaper 0.1-3→1.0-0 rpartScore 0.1.1→1.0-0 rtape 1.2→2.0 DDD 0.4→1.1 NlsyLinks 0.19→1.0 KernSmoothIRT 2.0→3.0 cosso 1.0-1→2.0-1 RISmed 1.2.3→2.0 betareg 2.4-1→3.0-0 orloca 3.2→4.0 BradleyTerry2 0.9-6→1.0-0 psychomix 0.2-1→1.0-0 primer 0.2→1.0

First-time CRAN authors

T.J. Clark-Wolf Tommaso Di Fonzo ×3 Juraj Parajka Christoph Sax ×15 Tobias Schieferdecker ×2 Peter Steiner ×2 Nelson Stevens ×2 Jan Wijffels ×28 Tung H. Pham Adam November Andrzej Oles ×3 Alessandro Barbiero Pier Alda Ferrari Marc Girondot ×4 David Gerard ×9 Poul Svante Eriksen ×2 Hiroyuki Yamamoto ×2 Hsuan-Yu Chen Yi-Hau Chen ×2 Takeshi Emura ×5