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DDD

Diversity-Dependent Diversification

v5.2.5 · May 4, 2026 · GPL-3

Description

Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, <DOI:10.1098/rspb.2011.1439>, Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, <DOI:10.1086/667574>, Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, <DOI:10.1111/2041-210X.12565> and Laudanno et al. 2021. Syst. Biol. 70: 389–407, <DOI:10.1093/sysbio/syaa048>. Also contains functions to simulate the diversity-dependent process.

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.9Mb
  sub-directories of 1Mb or more:
    libs   7.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  8.8Mb
  sub-directories of 1Mb or more:
    libs   8.3Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/DDD.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.9Mb
  sub-directories of 1Mb or more:
    libs   7.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  8.8Mb
  sub-directories of 1Mb or more:
    libs   8.3Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  7.9Mb
  sub-directories of 1Mb or more:
    libs   7.4Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  8.8Mb
  sub-directories of 1Mb or more:
    libs   8.3Mb

Reverse Dependencies (8)

suggests

Dependency Network

Dependencies Reverse dependencies deSolve ape phytools subplex DEoptim pso Matrix expm SparseM Rcpp DAISIE DAMOCLES PBD SADISA nodeSub secsse treestats nLTT DDD

Version History

43 tracked
updated 5.2.5 ← 5.2.4 diff May 4, 2026
new 5.2.4 Mar 10, 2026
updated 5.2.4 ← 5.2.2 diff Nov 27, 2025
updated 5.2.2 ← 5.2.1 diff Jul 10, 2023
updated 5.2.1 ← 5.0 diff Feb 21, 2023
updated 5.0 ← 4.4.1 diff Jul 18, 2021
updated 4.4.1 ← 4.4 diff Jan 13, 2021
updated 4.4 ← 4.3 diff Jun 2, 2020
updated 4.3 ← 4.2 diff Mar 31, 2020
updated 4.2 ← 4.1 diff Feb 9, 2020
updated 4.1 ← 4.0 diff Jun 20, 2019
updated 4.0 ← 3.9 diff Apr 21, 2019
updated 3.9 ← 3.8.1 diff Mar 18, 2019
updated 3.8.1 ← 3.7 diff Mar 11, 2019
updated 3.7 ← 3.6 diff Apr 23, 2018