curatedAdipoChIP
Bioc currentA Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
636
Files
21
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
0
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 1includes a package overview page
- Examples that run
- 0%1 never run
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 0%
Repository practices
2 development-tooling and community-health practices detected across 1 family in the upstream repository
Checks run against github.com/mahshaaban/curatedadipochip on 2026-10-11.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| metadata | data.frame | 1 × 17 | No other package |
Topics
People
- Mahmoud Ahmed author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("curatedAdipoChIP")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
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