Skip to content

eds

Bioc current

eds: Low-level reader for Alevin EDS format

v1.14.0 · Package record · software · GPL-2

Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

7 1 exported

Complexity

1 avg / 1 max

Call network

7 nodes / 4 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

433

Files

13

Compiled share

46.4%

Has compiled src

Yes

Language breakdown

R 58 (13.4%)C/C++/src 201 (46.4%)Tests 47 (10.9%)Docs 52 (12%)Vignettes 75 (17.3%)

API

Exported functions

1

Internal functions

1

Testing

Has tests

Yes

Test-to-code ratio

0.81

testthat edition

3

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

–

System requirements

1 externalC++11

C++ standard

–

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

8

First release

2022-11-01

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

–

Dep drift

0

LOC over versions

v3.16: 433 LOCv3.17: 433 LOCv3.18: 433 LOCv3.19: 433 LOCv3.20: 433 LOCv3.21: 433 LOCv3.22: 433 LOCv3.23: 433 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMEYes · 7 wordsVignettesYes · 1 · dynamicNEWSYes · 67% structuredCitation fileNoWebsitenot declared in DESCRIPTION
Help pages
1
Examples that run
100%1 run in a plain check
Exported functions with examples
100%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
0%

Repository practices

Upstream repositoryBeta

Checks run against github.com/mikelove/eds on 2026-10-21.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v4 (2026-10-20)

Topics

Maintainer
Avi Srivastava

Available on

CRANr2uBioconductorautoCRANCOPR

Depended on by (1)

Bioconductor (1)

Suggested by (1)

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("eds")
Srivastava, A., & Love, M. (2026). eds: eds: Low-level reader for Alevin EDS format (Version 1.14.0) [Computer software]. https://bioconductor.org/packages/eds

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for eds version 1.14.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →

Privacy choices

These apply to this browser and are stored on this device only. Nothing about your choice is sent to us.

Read the privacy policy