TDbasedUFE
Bioc currentTensor Decomposition Based Unsupervised Feature Extraction
Release Lineage
Entered 3.17 · Apr 26, 2023
Current · Requires R 4.6
Description
This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
11 11 exported
Complexity
2.5 avg / 8 max
Call network
11 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,553
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
0
Testing
Has tests
Yes
Test-to-code ratio
0.12
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
7
First release
2023-04-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 12 (1 internal)includes a package overview page
- Examples that run
- 100%11 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 84%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- QuickStart HTML
- TDbasedUFE HTML
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/tagtag/tdbasedufe on 2026-10-18.
Topics
Depended on by (1)
Bioconductor (1)
People
- Y-h. Taguchi author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TDbasedUFE")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.