RPesto

Phylogenetic Estimation of Shifts in the Tempo of Origination

v0.1.4 · Nov 26, 2025 · MIT + file LICENSE

Description

Implements diversification analyses using the phylogenetic birth-death-shift model. It leverages belief propagation techniques to calculate branch-specific diversification rates, see Kopperud & Hoehna (2025) <doi:10.1093/sysbio/syaf041>.

Downloads

201

Last 30 days

22374th

454

Last 90 days

710

Last year

Trend: +42.6% (30d vs prior 30d)

CRAN Check Status

8 NOTE

6 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	175.6s
r-devel-linux-x86_64-debian-gcc	NOTE	138.4s
r-devel-linux-x86_64-fedora-clang	NOTE	316.8s
r-devel-linux-x86_64-fedora-gcc	NOTE	322.6s
r-devel-macos-arm64	OK	26s
r-devel-windows-x86_64	NOTE	225s
r-oldrel-macos-arm64	NOTE	32s
r-oldrel-macos-x86_64	NOTE	192s
r-oldrel-windows-x86_64	OK	272s
r-patched-linux-x86_64	NOTE	175.7s
r-release-linux-x86_64	OK	146.8s
r-release-macos-arm64	OK	28s
r-release-macos-x86_64	OK	170s
r-release-windows-x86_64	OK	220s

Check details (8 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘RPesto/libs/RPesto.so’:
  Found non-API calls to R: ‘R_NamespaceRegistry’, ‘R_Srcref’,
    ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘RPesto/libs/RPesto.so’:
  Found non-API calls to R: ‘R_NamespaceRegistry’, ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘RPesto/libs/RPesto.so’:
  Found non-API calls to R: ‘R_NamespaceRegistry’, ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘RPesto/libs/RPesto.so’:
  Found non-API calls to R: ‘R_NamespaceRegistry’, ‘R_Srcref’,
    ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

NOTE r-devel-windows-x86_64

compiled code

File 'RPesto/libs/x64/RPesto.dll':
  Found non-API calls to R: 'R_NamespaceRegistry', 'R_Srcref',
    'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb

NOTE r-patched-linux-x86_64

compiled code

File ‘RPesto/libs/RPesto.so’:
  Found non-API calls to R: ‘R_MissingArg’, ‘R_NamespaceRegistry’,
    ‘R_Srcref’, ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.9Mb
  sub-directories of 1Mb or more:
    libs   5.8Mb

Dependency Network

Version History

new 0.1.4 Mar 10, 2026