R Observatory: Metrics for RevGadgets version 1.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

RevGadgets

1.2.1

Visualization and Post-Processing of 'RevBayes' Analyses

1packages depend

3.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Carrie TribbleFirst published 2021-09-135 releasesCRAN page ↗GitHub ↗

Processes and visualizes the output of complex phylogenetic analyses from the 'RevBayes' phylogenetic graphical modeling software.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("RevGadgets", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("revbayes/RevGadgets")

Development version from revbayes/RevGadgets. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-revgadgets

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 3.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.11

not tracked

Coverage

100%

Documentation · exports

21

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 334 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 26%
Documented parameters: 100%
Return-value docs: 97%
References docs: 14%

Downloads

3.5K

CRAN downloads in the past year

Rank #12,340 · ~10/day · ~295/mo

Releases R versions

Daily download trend is not available in this view yet.

22330 days

80890 days

3.5K1 year

Compare downloads with other packages →

Also on126 r2u43 c2d4u

Repository

GitHub ↗ revbayes/revgadgets

14Stars

9Forks

6Open issues

0Open PRs

6Releases

609Commits

23Contributors

609 commits · Last activity 2026-03-20 · 0% stars, 30d

Stars over time

2024-01-03 · 132026-07-07 · 14

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/revbayes/revgadgets on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2.0

Imports (21)

ape phytools dplyr ggtree tidytree treeio ggplot2 reshapemethodstidyr (>= 1.1.0)tibble gginnards ggplotify (>= 0.0.5)ggpp ggimage pngstatsutilsgrDevicesdeeptime scales

LinkingTo (0)

none

Suggests (4)

testthat knitr rmarkdown phangorn

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Revticulate

Code & Tests

Datasets

People & History

People (12)

Maintainer (1)

Carrie Tribble

Author, Maintainer

Authors (10)

Carrie Tribble

Author, Maintainer

Joelle Barido-Sottani

Author

Ronja J. Billenstein

Author · added in 1.2.0

Author

Author

Author

Author

Author

Author

Author

Contributors (2)

Nagashima Kengo

Contributor

Schliep Klaus

Contributor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.1Latest
2023-11-29 · current release · diff ↗
1.2.0
2023-11-16 · diff ↗
1.1.1
2023-05-25 · diff ↗
unarchivedReturned to CRAN
2023-05-25
archivedRemoved from CRAN
2023-05-18
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
1.1.0
2022-12-03 · diff ↗
unarchivedReturned to CRAN
2022-12-03
R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2022-04-04
'coercion to logical' errors were not corrected in time
1.0.0
2021-09-13
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-09-13
Total releases: 5 / 5 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.2.0
Download size: 799 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Phylogenetics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RevGadgets")

Format

Tribble, C., Barido-Sottani, J., Billenstein, R. J., Freyman, W. A., Hohna, S., Kengo, N., Klaus, S., Kopperud, B. T., Landis, M. J., Magee, A., May, M. R., & Ying, L. J. (2023). RevGadgets: Visualization and Post-Processing of 'RevBayes' Analyses (Version 1.2.1) [Computer software]. https://doi.org/10.32614/CRAN.package.RevGadgets

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RevGadgets version 1.2.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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