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RevGadgets

Visualization and Post-Processing of 'RevBayes' Analyses

v1.2.1 · Nov 29, 2023 · GPL-3

Description

Processes and visualizes the output of complex phylogenetic analyses from the 'RevBayes' phylogenetic graphical modeling software.

Downloads

CRAN

333

Last 30 days

13428th

880

Last 90 days

3.6K

Last year

Trend: +28.6% (30d vs prior 30d)

r2u CRAN

1

Last 30 days

25

Last 90 days

119

Last year

Trend: -88.9% (30d vs prior 30d)

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Packages required but not available: 'ggtree', 'ggimage'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026
ERROR r-release-linux-x86_64

package dependencies

Packages required but not available: 'ggtree', 'treeio'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

14,067

Files

160

Compiled share

0%

Has compiled src

No

Language breakdown

R 9,699 (68.9%)Tests 1,063 (7.6%)Docs 3,305 (23.5%)

API

Exported functions

36

Internal functions

29

Recent export changes

v1.2.0+2 plotPopSizes, processPopSizes
v1.1.0+2 plotDiversityOBDP, readOBDP

Testing & CI

Has tests

Yes

Test-to-code ratio

0.11

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

97.1%

\dontrun example ratio

73.5%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

90.5%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.2.0

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

5

First release

2021-09-13

Latest release

2023-11-29

Avg cadence

174 days

Cold removal rate

Dep drift

15

LOC over versions

v1.0.0: 12,493 LOCv1.1.0: 13,409 LOCv1.1.1: 13,497 LOCv1.2.0: 14,067 LOCv1.2.1: 14,067 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (1)

suggests

Dependency Network

Dependencies Reverse dependencies ape phytools dplyr ggtree tidytree treeio ggplot2 reshape tidyr (>= 1.1.0) tibble gginnards ggplotify (>= 0.0.5) ggpp ggimage png +2 more dependencies Revticulate RevGadgets

Version History

6 tracked
new 1.2.1 Mar 10, 2026
updated 1.2.1 ← 1.2.0 diff Nov 28, 2023
updated 1.2.0 ← 1.1.1 diff Nov 15, 2023
updated 1.1.1 ← 1.1.0 diff May 24, 2023
updated 1.1.0 ← 1.0.0 diff Dec 2, 2022
new 1.0.0 Sep 12, 2021