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topdownr

Bioc current

Investigation of Fragmentation Conditions in Top-Down Proteomics

v1.34.0 · software · GPL (>= 3)
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Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

The topdownr package allows automatic and systemic investigation of fragment conditions. It creates Thermo Orbitrap Fusion Lumos method files to test hundreds of fragmentation conditions. Additionally it provides functions to analyse and process the generated MS data and determine the best conditions to maximise overall fragment coverage.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Infrastructure
Software › ResearchField › Proteomics
Software › Technology › MassSpectrometry
Software › BiologicalQuestion › Coverage

Depended on by (1)

Bioconductor (1)

topdownrdata

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