simPIC
Bioc currentFlexible simulation of paired-insertion counts for single-cell ATAC-sequencing data
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
simPIC is a package for simulating single-cell ATAC-seq count data. It provides a user-friendly, well documented interface for data simulation. Functions are provided for parameter estimation, realistic scATAC-seq data simulation, and comparing real and simulated datasets.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
37 9 exported
Complexity
2.5 avg / 18 max
Call network
37 nodes / 55 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,083
Files
54
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
26
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.10
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
6.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Sagrika Chugh author maintainer
- Davis McCarthy author
- Heejung Shim author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("simPIC")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.